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NM_000059.4(BRCA2):c.2928C>T (p.Ser976=) AND Hereditary cancer-predisposing syndrome

Germline classification:
Likely benign (1 submission)
Last evaluated:
Mar 21, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003308267.2

Allele description [Variation Report for NM_000059.4(BRCA2):c.2928C>T (p.Ser976=)]

NM_000059.4(BRCA2):c.2928C>T (p.Ser976=)

Gene:
BRCA2:BRCA2 DNA repair associated [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
13q13.1
Genomic location:
Preferred name:
NM_000059.4(BRCA2):c.2928C>T (p.Ser976=)
HGVS:
  • NC_000013.11:g.32337283C>T
  • NG_012772.3:g.26804C>T
  • NM_000059.4:c.2928C>TMANE SELECT
  • NM_001406719.1:c.2928C>T
  • NM_001406720.1:c.2928C>T
  • NM_001406721.1:c.1909+3896C>T
  • NM_001406722.1:c.424+6253C>T
  • NP_000050.2:p.Ser976=
  • NP_000050.3:p.Ser976=
  • NP_001393648.1:p.Ser976=
  • NP_001393649.1:p.Ser976=
  • LRG_293t1:c.2928C>T
  • LRG_293:g.26804C>T
  • LRG_293p1:p.Ser976=
  • NC_000013.10:g.32911420C>T
  • NM_000059.3:c.2928C>T
  • NR_176251.1:n.3127C>T
Molecular consequence:
  • NM_001406721.1:c.1909+3896C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001406722.1:c.424+6253C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NR_176251.1:n.3127C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NM_000059.4:c.2928C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001406719.1:c.2928C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001406720.1:c.2928C>T - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Name:
Hereditary cancer-predisposing syndrome
Synonyms:
Neoplastic Syndromes, Hereditary; Tumor predisposition; Cancer predisposition; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0015356; MeSH: D009386; MedGen: C0027672

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Assertion and evidence details

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Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV004005385Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Likely benign
(Mar 21, 2023) 		germlineclinical testing

Citation Link

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Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV004005385.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024