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NM_000051.4(ATM):c.7859T>C (p.Val2620Ala) AND Hereditary cancer-predisposing syndrome

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Mar 30, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003297570.9

Allele description [Variation Report for NM_000051.4(ATM):c.7859T>C (p.Val2620Ala)]

NM_000051.4(ATM):c.7859T>C (p.Val2620Ala)

Genes:
ATM:ATM serine/threonine kinase [Gene - OMIM - HGNC]
C11orf65:chromosome 11 open reading frame 65 [Gene - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
11q22.3
Genomic location:
Preferred name:
NM_000051.4(ATM):c.7859T>C (p.Val2620Ala)
HGVS:
  • NC_000011.10:g.108332832T>C
  • NG_009830.1:g.115001T>C
  • NG_054724.1:g.142001A>G
  • NM_000051.4:c.7859T>CMANE SELECT
  • NM_001330368.2:c.641-23761A>G
  • NM_001351110.2:c.*38+2388A>G
  • NM_001351834.2:c.7859T>C
  • NP_000042.3:p.Val2620Ala
  • NP_000042.3:p.Val2620Ala
  • NP_001338763.1:p.Val2620Ala
  • LRG_135t1:c.7859T>C
  • LRG_135:g.115001T>C
  • LRG_135p1:p.Val2620Ala
  • NC_000011.9:g.108203559T>C
  • NM_000051.3:c.7859T>C
Protein change:
V2620A
Molecular consequence:
  • NM_001330368.2:c.641-23761A>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001351110.2:c.*38+2388A>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_000051.4:c.7859T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001351834.2:c.7859T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Hereditary cancer-predisposing syndrome
Synonyms:
Neoplastic Syndromes, Hereditary; Tumor predisposition; Cancer predisposition; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0015356; MeSH: D009386; MedGen: C0027672

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV004007205Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Uncertain significance
(Mar 30, 2023) 		germlineclinical testing

Citation Link

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV004007205.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The p.V2620A variant (also known as c.7859T>C), located in coding exon 52 of the ATM gene, results from a T to C substitution at nucleotide position 7859. The valine at codon 2620 is replaced by alanine, an amino acid with similar properties. This amino acid position is not well conserved in available vertebrate species. In addition, the in silico prediction for this alteration is inconclusive. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 3, 2024