NM_000051.4(ATM):c.5675-27C>A AND Hereditary cancer-predisposing syndrome

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Apr 25, 2022
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV003296576.2

Allele description [Variation Report for NM_000051.4(ATM):c.5675-27C>A]

NM_000051.4(ATM):c.5675-27C>A

Gene:

ATM:ATM serine/threonine kinase [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

11q22.3

Genomic location:

Preferred name:

NM_000051.4(ATM):c.5675-27C>A

HGVS:

NC_000011.10:g.108307870C>A
NG_009830.1:g.90039C>A
NG_054724.1:g.166963G>T
NM_000051.4:c.5675-27C>AMANE SELECT
NM_001351834.2:c.5675-27C>A
LRG_135t1:c.5675-27C>A
LRG_135:g.90039C>A
NC_000011.9:g.108178597C>A
NM_000051.3:c.5675-27C>A

Molecular consequence:

NM_000051.4:c.5675-27C>A - intron variant - [Sequence Ontology: SO:0001627]
NM_001351834.2:c.5675-27C>A - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Name:: Hereditary cancer-predisposing syndrome
Synonyms:: Neoplastic Syndromes, Hereditary; Tumor predisposition; Cancer predisposition; See all synonyms [MedGen]
Identifiers:: MONDO: MONDO:0015356; MeSH: D009386; MedGen: C0027672

Recent activity

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BJ076642 NIBB Mochii normalized Xenopus tailbud library Xenopus laevis cDNA clon...
BJ076642 NIBB Mochii normalized Xenopus tailbud library Xenopus laevis cDNA clone XL058e20 3', mRNA sequence
gi|17521558|gnl|dbEST|10540951|dbj| 642.1|

Nucleotide

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV003999075	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Apr 25, 2022)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV003999075

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Apr 25, 2022)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV003999075.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.5675-27C>A intronic alteration consists of a C to A substitution 27 nucleotides before coding exon 37 in the ATM gene. Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: May 7, 2024

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