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NM_001289104.2(PRKCSH):c.862G>A (p.Asp288Asn) AND Inborn genetic diseases

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
May 28, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003293892.2

Allele description [Variation Report for NM_001289104.2(PRKCSH):c.862G>A (p.Asp288Asn)]

NM_001289104.2(PRKCSH):c.862G>A (p.Asp288Asn)

Gene:
PRKCSH:PRKCSH beta subunit of glucosidase II [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19p13.2
Genomic location:
Preferred name:
NM_001289104.2(PRKCSH):c.862G>A (p.Asp288Asn)
HGVS:
  • NC_000019.10:g.11447451G>A
  • NG_009300.1:g.16998G>A
  • NM_001001329.3:c.862G>A
  • NM_001289102.2:c.862G>A
  • NM_001289103.2:c.862G>A
  • NM_001289104.2:c.862G>AMANE SELECT
  • NM_001379608.1:c.862G>A
  • NM_001379609.1:c.862G>A
  • NM_002743.3:c.862G>A
  • NP_001001329.1:p.Asp288Asn
  • NP_001276031.1:p.Asp288Asn
  • NP_001276032.1:p.Asp288Asn
  • NP_001276033.1:p.Asp288Asn
  • NP_001366537.1:p.Asp288Asn
  • NP_001366538.1:p.Asp288Asn
  • NP_002734.2:p.Asp288Asn
  • NC_000019.9:g.11558266G>A
  • NC_000019.9:g.11558266G>A
  • NM_002743.2:c.862G>A
Protein change:
D288N
Links:
dbSNP: rs144616910
NCBI 1000 Genomes Browser:
rs144616910
Molecular consequence:
  • NM_001001329.3:c.862G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001289102.2:c.862G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001289103.2:c.862G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001289104.2:c.862G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001379608.1:c.862G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001379609.1:c.862G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_002743.3:c.862G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Inborn genetic diseases
Identifiers:
MeSH: D030342; MedGen: C0950123

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV004006783Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)
Uncertain significance
(May 28, 2023)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV004006783.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The c.862G>A (p.D288N) alteration is located in exon 11 (coding exon 10) of the PRKCSH gene. This alteration results from a G to A substitution at nucleotide position 862, causing the aspartic acid (D) at amino acid position 288 to be replaced by an asparagine (N). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024