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NM_000518.5(HBB):c.420T>G (p.Asn140Lys) AND not specified

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
May 26, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003236444.1

Allele description [Variation Report for NM_000518.5(HBB):c.420T>G (p.Asn140Lys)]

NM_000518.5(HBB):c.420T>G (p.Asn140Lys)

Genes:
LOC110006319:beta-globin gene 3' regulatory region [Gene]
HBB:hemoglobin subunit beta [Gene - OMIM - HGNC]
LOC107133510:origin of replication at HBB [Gene]
Variant type:
single nucleotide variant
Cytogenetic location:
11p15.4
Genomic location:
Preferred name:
NM_000518.5(HBB):c.420T>G (p.Asn140Lys)
HGVS:
  • NC_000011.10:g.5225622A>C
  • NG_000007.3:g.71994T>G
  • NG_046672.1:g.3557A>C
  • NG_053049.1:g.1943A>C
  • NG_059281.1:g.6450T>G
  • NM_000518.5:c.420T>GMANE SELECT
  • NP_000509.1:p.Asn140Lys
  • LRG_1232t1:c.420T>G
  • LRG_1232:g.6450T>G
  • LRG_1232p1:p.Asn140Lys
  • NC_000011.9:g.5246852A>C
  • NM_000518.4:c.420T>G
Protein change:
N140K
Molecular consequence:
  • NM_000518.5:c.420T>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV003934599Women's Health and Genetics/Laboratory Corporation of America, LabCorp
criteria provided, single submitter

(LabCorp Variant Classification Summary - May 2015)
Uncertain significance
(May 26, 2023)
germlineclinical testing

PubMed (3)
[See all records that cite these PMIDs]

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Hb Hinsdale [beta 139 (H17)Asn----Lys]: a variant in the central cavity showing reduced affinity for oxygen and 2,3-diphosphoglycerate.

Moo-Penn WF, Johnson MH, Jue DL, Lonser R.

Hemoglobin. 1989;13(5):455-64.

PubMed [citation]
PMID:
2513289

Molecular characterization of a rare hemoglobin variant: Hb-Hinsdale: beta139(H17)ASN-->Lys.

Degani V, Leone D, Murtas R, De Angelis S, Rabino-Massa E.

Minerva Med. 2001 Feb;92(1):57-9.

PubMed [citation]
PMID:
11317140
See all PubMed Citations (3)

Details of each submission

From Women's Health and Genetics/Laboratory Corporation of America, LabCorp, SCV003934599.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (3)

Description

Variant summary: HBB c.420T>G (p.Asn140Lys) results in a non-conservative amino acid change in the encoded protein sequence. Three of five in-silico tools predict a benign effect of the variant on protein function. The variant was absent in 251376 control chromosomes (gnomAD). The available data on variant occurrences in the general population are insufficient to allow any conclusion about variant significance. c.420T>G (Hb-Hinsdale) has been reported in the literature in individuals affected with mild anemia (examples: Moo-Penn_1989 and Degani_2001). These report(s) do not provide unequivocal conclusions about association of the variant with Hemoglobinopathy. Multiple publications have reported experimental evidence evaluating an impact on protein function, one study reported this variant did not affect HbS gelation (Watowich_1989) and a seperate study showed the variant mildly reduced oxygen affinity (Moo-Penn_1989). The following publications have been ascertained in the context of this evaluation (PMID: 2513289, 2585512, 11317140). No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar after 2014. Based on the evidence outlined above, the variant was classified as uncertain significance.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jun 24, 2023