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NM_138554.5(TLR4):c.896A>G (p.Asp299Gly) AND Susceptibility to severe coronavirus disease (COVID-19)

Germline classification:
Uncertain significance (1 submission)
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003231092.1

Allele description [Variation Report for NM_138554.5(TLR4):c.896A>G (p.Asp299Gly)]

NM_138554.5(TLR4):c.896A>G (p.Asp299Gly)

Gene:
TLR4:toll like receptor 4 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
9q33.1
Genomic location:
Preferred name:
NM_138554.5(TLR4):c.896A>G (p.Asp299Gly)
HGVS:
  • NC_000009.12:g.117713024A>G
  • NG_011475.1:g.13843A>G
  • NG_011475.2:g.13622A>G
  • NM_003266.4:c.776A>G
  • NM_138554.5:c.896A>GMANE SELECT
  • NM_138557.3:c.296A>G
  • NP_003257.1:p.Asp259Gly
  • NP_612564.1:p.Asp299Gly
  • NP_612567.1:p.Asp99Gly
  • LRG_320t1:c.896A>G
  • LRG_320:g.13622A>G
  • LRG_320p1:p.Asp299Gly
  • NC_000009.11:g.120475302A>G
  • O00206:p.Asp299Gly
Protein change:
D259G; Asp299Gly
Links:
UniProtKB: O00206#VAR_012739; OMIM: 603030.0001; dbSNP: rs4986790
NCBI 1000 Genomes Browser:
rs4986790
Molecular consequence:
  • NM_003266.4:c.776A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_138554.5:c.896A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_138557.3:c.296A>G - missense variant - [Sequence Ontology: SO:0001583]
Functional consequence:
Increased function

Condition(s)

Name:
Susceptibility to severe coronavirus disease (COVID-19)
Identifiers:

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV003930275HLA Laboratory, Instituto Nacional de Enfermedades Respiratorias Ismael Cosio Villegas
no assertion criteria provided
Uncertain significancegermlineresearch

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes1169not providednot providednot providednot providedresearch

Details of each submission

From HLA Laboratory, Instituto Nacional de Enfermedades Respiratorias Ismael Cosio Villegas, SCV003930275.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1169not providednot providedresearchnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided1169not providednot providednot provided

Last Updated: Sep 29, 2024