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NM_000492.4(CFTR):c.3389G>C (p.Gly1130Ala) AND not specified

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Jun 20, 2024
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003230382.2

Allele description [Variation Report for NM_000492.4(CFTR):c.3389G>C (p.Gly1130Ala)]

NM_000492.4(CFTR):c.3389G>C (p.Gly1130Ala)

Gene:
CFTR:CF transmembrane conductance regulator [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
7q31.2
Genomic location:
Preferred name:
NM_000492.4(CFTR):c.3389G>C (p.Gly1130Ala)
HGVS:
  • NC_000007.14:g.117614634G>C
  • NG_016465.4:g.153851G>C
  • NM_000492.4:c.3389G>CMANE SELECT
  • NP_000483.3:p.Gly1130Ala
  • NP_000483.3:p.Gly1130Ala
  • LRG_663t1:c.3389G>C
  • LRG_663:g.153851G>C
  • LRG_663p1:p.Gly1130Ala
  • NC_000007.13:g.117254688G>C
  • NM_000492.3:c.3389G>C
  • p.Gly1130Ala
Protein change:
G1130A
Links:
dbSNP: rs397508550
NCBI 1000 Genomes Browser:
rs397508550
Molecular consequence:
  • NM_000492.4:c.3389G>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV003929018Women's Health and Genetics/Laboratory Corporation of America, LabCorp
criteria provided, single submitter

(LabCorp Variant Classification Summary - May 2015)
Uncertain significance
(Jun 20, 2024)
germlineclinical testing

PubMed (7)
[See all records that cite these PMIDs]

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Mutations of the CFTR gene in Turkish patients with congenital bilateral absence of the vas deferens.

Dayangaç D, Erdem H, Yilmaz E, Sahin A, Sohn C, Ozgüç M, Dörk T.

Hum Reprod. 2004 May;19(5):1094-100. Epub 2004 Apr 7.

PubMed [citation]
PMID:
15070876

Gender-sensitive association of CFTR gene mutations and 5T allele emerging from a large survey on infertility.

Morea A, Cameran M, Rebuffi AG, Marzenta D, Marangon O, Picci L, Zacchello F, Scarpa M.

Mol Hum Reprod. 2005 Aug;11(8):607-14. Epub 2005 Aug 26.

PubMed [citation]
PMID:
16126774
See all PubMed Citations (7)

Details of each submission

From Women's Health and Genetics/Laboratory Corporation of America, LabCorp, SCV003929018.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (7)

Description

Variant summary: CFTR c.3389G>C (p.Gly1130Ala) results in a non-conservative amino acid change located in the ABC transporter type 1, transmembrane domain (IPR011527) of the encoded protein sequence. Three of five in-silico tools predict a damaging effect of the variant on protein function. The variant allele was found at a frequency of 3.1e-05 in 292134 control chromosomes. The available data on variant occurrences in the general population are insufficient to allow any conclusion about variant significance. c.3389G>C has been reported in the literature in individuals affected with Congenital bilateral absense of the vas deferens (CBAVD) or infertility (Dayangac_2004, Havasi_2010, Ocak_2014, Chamayou_2020) and in an individual with intermediate sweat chloride levels but no diagnosis of Cystic fibrosis (Terlizzi_2019). These data do not allow any conclusion about variant significance. To our knowledge, no experimental evidence demonstrating an impact on protein function has been reported. The following publications have been ascertained in the context of this evaluation (PMID: 15070876, 16126774, 20100616, 25536748, 31005549, 32357917, 34140271). ClinVar contains an entry for this variant (Variation ID: 53730). Based on the evidence outlined above, the variant was classified as uncertain significance.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024