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NM_001243133.2(NLRP3):c.2098G>A (p.Asp700Asn) AND multiple conditions

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Mar 30, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003224420.1

Allele description [Variation Report for NM_001243133.2(NLRP3):c.2098G>A (p.Asp700Asn)]

NM_001243133.2(NLRP3):c.2098G>A (p.Asp700Asn)

Gene:
NLRP3:NLR family pyrin domain containing 3 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1q44
Genomic location:
Preferred name:
NM_001243133.2(NLRP3):c.2098G>A (p.Asp700Asn)
HGVS:
  • NC_000001.11:g.247425547G>A
  • NG_007509.2:g.14375G>A
  • NM_001079821.3:c.2098G>A
  • NM_001127461.3:c.2098G>A
  • NM_001127462.3:c.2098G>A
  • NM_001243133.2:c.2098G>AMANE SELECT
  • NM_004895.5:c.2104G>A
  • NM_183395.3:c.2098G>A
  • NP_001073289.2:p.Asp700Asn
  • NP_001120933.2:p.Asp700Asn
  • NP_001120934.2:p.Asp700Asn
  • NP_001230062.1:p.Asp700Asn
  • NP_004886.3:p.Asp702Asn
  • NP_004886.3:p.Asp702Asn
  • NP_899632.2:p.Asp700Asn
  • LRG_197t1:c.2104G>A
  • LRG_197:g.14375G>A
  • LRG_197p1:p.Asp702Asn
  • NC_000001.10:g.247588849G>A
  • NM_004895.4:c.2104G>A
Protein change:
D700N
Links:
dbSNP: rs781561828
NCBI 1000 Genomes Browser:
rs781561828
Molecular consequence:
  • NM_001079821.3:c.2098G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001127461.3:c.2098G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001127462.3:c.2098G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001243133.2:c.2098G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_004895.5:c.2104G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_183395.3:c.2098G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Chronic infantile neurological, cutaneous and articular syndrome (CINCA)
Synonyms:
CHRONIC NEUROLOGIC CUTANEOUS AND ARTICULAR SYNDROME; Chronic Infantile Neurological Cutaneous Articular syndrome; Infantile Onset Multisystem Inflammatory Disease; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0011776; MedGen: C0409818; Orphanet: 1451; OMIM: 607115
Name:
Keratitis fugax hereditaria
Synonyms:
KERATOENDOTHELIITIS FUGAX HEREDITARIA
Identifiers:
MONDO: MONDO:0007849; MedGen: C1835697; OMIM: 148200
Name:
Familial amyloid nephropathy with urticaria AND deafness (MWS)
Synonyms:
Urticaria, deafness and amyloidosis; Urticaria-deafness-amyloidosis syndrome; UDA syndrome; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0008633; MedGen: C0268390; Orphanet: 575; OMIM: 191900
Name:
Familial cold autoinflammatory syndrome 1 (FCAS1)
Synonyms:
CRYOPYRIN-ASSOCIATED PERIODIC SYNDROME 1; Familial cold inflammatory syndrome 1
Identifiers:
MONDO: MONDO:0007349; MedGen: C4551895; Orphanet: 47045; OMIM: 120100
Name:
Hearing loss, autosomal dominant 34, with or without inflammation
Synonyms:
Deafness, autosomal dominant 34, with or without inflammation
Identifiers:
MONDO: MONDO:0033261; MedGen: C4521680; OMIM: 617772

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV003920286Center for Genomics, Ann and Robert H. Lurie Children's Hospital of Chicago
criteria provided, single submitter

(ACMG Guidelines, 2015)		Uncertain significance
(Mar 30, 2021) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Center for Genomics, Ann and Robert H. Lurie Children's Hospital of Chicago, SCV003920286.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

NLRP3 NM_004895.4 exon 3 p.Asp702Asn (c.2104G>A): This variant has not been reported in the literature but is present in 0.03% (13/33578) of Latino alleles in the Genome Aggregation Database (http://gnomad.broadinstitute.org/variant/1-247588849-G-A). Evolutionary conservation and computational predictive tools suggest that this variant may not impact the protein. In summary, data on this variant is insufficient for disease classification. Therefore, the clinical significance of this variant is uncertain.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024