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NM_006231.4(POLE):c.94C>T (p.Leu32Phe) AND multiple conditions

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Mar 30, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003224235.2

Allele description [Variation Report for NM_006231.4(POLE):c.94C>T (p.Leu32Phe)]

NM_006231.4(POLE):c.94C>T (p.Leu32Phe)

Gene:
POLE:DNA polymerase epsilon, catalytic subunit [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
12q24.33
Genomic location:
Preferred name:
NM_006231.4(POLE):c.94C>T (p.Leu32Phe)
HGVS:
  • NC_000012.12:g.132681248G>A
  • NG_033840.1:g.11277C>T
  • NM_006231.4:c.94C>TMANE SELECT
  • NP_006222.2:p.Leu32Phe
  • NP_006222.2:p.Leu32Phe
  • LRG_789t1:c.94C>T
  • LRG_789:g.11277C>T
  • LRG_789p1:p.Leu32Phe
  • NC_000012.11:g.133257834G>A
  • NM_006231.2:c.94C>T
  • NM_006231.3:c.94C>T
Protein change:
L32F
Links:
dbSNP: rs781513537
NCBI 1000 Genomes Browser:
rs781513537
Molecular consequence:
  • NM_006231.4:c.94C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Colorectal cancer, susceptibility to, 12 (CRCS12)
Synonyms:
COLORECTAL CANCER, SUSCEPTIBILITY TO, ON CHROMOSOME 12q24
Identifiers:
MONDO: MONDO:0014038; MedGen: C3554460; Orphanet: 220460; OMIM: 615083
Name:
Facial dysmorphism-immunodeficiency-livedo-short stature syndrome
Synonyms:
Facial dysmorphism, immunodeficiency, livedo, and short stature
Identifiers:
MONDO: MONDO:0014058; MedGen: C3554576; Orphanet: 352712; OMIM: 615139
Name:
Intrauterine growth retardation, metaphyseal dysplasia, adrenal hypoplasia congenita, genital anomalies, and immunodeficiency
Synonyms:
IMAGEI SYNDROME
Identifiers:
MONDO: MONDO:0032684; MedGen: C5193036; OMIM: 618336

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV003920341Center for Genomics, Ann and Robert H. Lurie Children's Hospital of Chicago
criteria provided, single submitter

(ACMG Guidelines, 2015)		Uncertain significance
(Mar 30, 2021) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Center for Genomics, Ann and Robert H. Lurie Children's Hospital of Chicago, SCV003920341.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

POLE NM_006231.3 exon 2 p.Leu32Phe (c.94C>T): This variant has not been reported in the literature but is present in 0.07% (28/35438) of Latino alleles in the Genome Aggregation Database (https://gnomad.broadinstitute.org/variant/12-133257834-G-A?dataset=gnomad_r2_1). This variant is present in ClinVar (Variation ID:240634). Evolutionary conservation suggests that this variant may not impact the protein; computational predictive tools for this variant are unclear. In summary, data on this variant is insufficient for disease classification. Therefore, the clinical significance of this variant is uncertain.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 10, 2024