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NM_000404.4(GLB1):c.1768C>T (p.Arg590Cys) AND GLB1-related disorder

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Apr 11, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003221293.2

Allele description [Variation Report for NM_000404.4(GLB1):c.1768C>T (p.Arg590Cys)]

NM_000404.4(GLB1):c.1768C>T (p.Arg590Cys)

Gene:
GLB1:galactosidase beta 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
3p22.3
Genomic location:
Preferred name:
NM_000404.4(GLB1):c.1768C>T (p.Arg590Cys)
Other names:
p.Arg590Cys
HGVS:
  • NC_000003.12:g.32997311G>A
  • NG_009005.1:g.104892C>T
  • NM_000404.4:c.1768C>TMANE SELECT
  • NM_001079811.3:c.1678C>T
  • NM_001135602.3:c.1375C>T
  • NM_001317040.2:c.1912C>T
  • NM_001393580.1:c.1734+16745C>T
  • NP_000395.3:p.Arg590Cys
  • NP_001073279.2:p.Arg560Cys
  • NP_001129074.2:p.Arg459Cys
  • NP_001303969.2:p.Arg638Cys
  • NC_000003.11:g.33038803G>A
  • NM_000404.2:c.1768C>T
  • NM_000404.3:c.1768C>T
Protein change:
R459C
Links:
dbSNP: rs794727165
NCBI 1000 Genomes Browser:
rs794727165
Molecular consequence:
  • NM_001393580.1:c.1734+16745C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_000404.4:c.1768C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001079811.3:c.1678C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001135602.3:c.1375C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001317040.2:c.1912C>T - missense variant - [Sequence Ontology: SO:0001583]
Functional consequence:
Unknown function

Condition(s)

Name:
GLB1-related disorder
Identifiers:
MedGen: CN377807

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV003915717Daryl Scott Lab, Baylor College of Medicine
criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenic
(Apr 11, 2023)
biparentalclinical testing

PubMed (2)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedbiparentalyes1not providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Clinical exome sequencing efficacy and phenotypic expansions involving anomalous pulmonary venous return.

Huth EA, Zhao X, Owen N, Luna PN, Vogel I, Dorf ILH, Joss S, Clayton-Smith J, Parker MJ, Louw JJ, Gewillig M, Breckpot J, Kraus A, Sasaki E, Kini U, Burgess T, Tan TY, Armstrong R, Neas K, Ferrero GB, Brusco A, Kerstjens-Frederikse WS, et al.

Eur J Hum Genet. 2023 Dec;31(12):1430-1439. doi: 10.1038/s41431-023-01451-4. Epub 2023 Sep 7.

PubMed [citation]
PMID:
37673932
PMCID:
PMC10689790

Details of each submission

From Daryl Scott Lab, Baylor College of Medicine, SCV003915717.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (2)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1biparentalyesnot providednot providednot provided1not providednot providednot provided

Last Updated: Sep 29, 2024