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NM_000465.4(BARD1):c.125A>T (p.Asp42Val) AND Hereditary cancer-predisposing syndrome

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Feb 17, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003176972.2

Allele description [Variation Report for NM_000465.4(BARD1):c.125A>T (p.Asp42Val)]

NM_000465.4(BARD1):c.125A>T (p.Asp42Val)

Gene:
BARD1:BRCA1 associated RING domain 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
2q35
Genomic location:
Preferred name:
NM_000465.4(BARD1):c.125A>T (p.Asp42Val)
HGVS:
  • NC_000002.12:g.214809445T>A
  • NG_012047.3:g.5267A>T
  • NM_000465.4:c.125A>TMANE SELECT
  • NM_001282543.2:c.125A>T
  • NM_001282545.2:c.125A>T
  • NM_001282548.2:c.125A>T
  • NM_001282549.2:c.125A>T
  • NP_000456.2:p.Asp42Val
  • NP_001269472.1:p.Asp42Val
  • NP_001269474.1:p.Asp42Val
  • NP_001269477.1:p.Asp42Val
  • NP_001269478.1:p.Asp42Val
  • LRG_297t1:c.125A>T
  • LRG_297:g.5267A>T
  • LRG_297p1:p.Asp42Val
  • NC_000002.11:g.215674169T>A
  • NM_000465.2:c.125A>T
  • NR_104212.2:n.239A>T
  • NR_104215.2:n.239A>T
  • NR_104216.2:n.239A>T
Protein change:
D42V
Molecular consequence:
  • NM_000465.4:c.125A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001282543.2:c.125A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001282545.2:c.125A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001282548.2:c.125A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001282549.2:c.125A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NR_104212.2:n.239A>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_104215.2:n.239A>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_104216.2:n.239A>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:
Hereditary cancer-predisposing syndrome
Synonyms:
Neoplastic Syndromes, Hereditary; Tumor predisposition; Cancer predisposition; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0015356; MeSH: D009386; MedGen: C0027672

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV003854356Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)
Uncertain significance
(Feb 17, 2023)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV003854356.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The p.D42V variant (also known as c.125A>T), located in coding exon 1 of the BARD1 gene, results from an A to T substitution at nucleotide position 125. The aspartic acid at codon 42 is replaced by valine, an amino acid with highly dissimilar properties. This amino acid position is conserved. In addition, this alteration is predicted to be tolerated by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 1, 2024