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NM_024675.4(PALB2):c.3008A>C (p.Asn1003Thr) AND Hereditary cancer-predisposing syndrome

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Dec 27, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003176375.2

Allele description [Variation Report for NM_024675.4(PALB2):c.3008A>C (p.Asn1003Thr)]

NM_024675.4(PALB2):c.3008A>C (p.Asn1003Thr)

Gene:
PALB2:partner and localizer of BRCA2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
16p12.2
Genomic location:
Preferred name:
NM_024675.4(PALB2):c.3008A>C (p.Asn1003Thr)
HGVS:
  • NC_000016.10:g.23621467T>G
  • NG_007406.1:g.24891A>C
  • NM_001407296.1:c.2948A>C
  • NM_001407297.1:c.2936A>C
  • NM_001407298.1:c.2846A>C
  • NM_001407299.1:c.3008A>C
  • NM_001407300.1:c.2834+2542A>C
  • NM_001407301.1:c.3008A>C
  • NM_001407302.1:c.2846A>C
  • NM_001407304.1:c.2123A>C
  • NM_001407305.1:c.2123A>C
  • NM_001407306.1:c.2123A>C
  • NM_001407307.1:c.1961A>C
  • NM_001407308.1:c.2123A>C
  • NM_001407309.1:c.2123A>C
  • NM_001407310.1:c.2123A>C
  • NM_001407311.1:c.2123A>C
  • NM_001407312.1:c.1220A>C
  • NM_001407313.1:c.1220A>C
  • NM_001407314.1:c.542A>C
  • NM_024675.4:c.3008A>CMANE SELECT
  • NP_001394225.1:p.Asn983Thr
  • NP_001394226.1:p.Asn979Thr
  • NP_001394227.1:p.Asn949Thr
  • NP_001394228.1:p.Asn1003Thr
  • NP_001394230.1:p.Asn1003Thr
  • NP_001394231.1:p.Asn949Thr
  • NP_001394233.1:p.Asn708Thr
  • NP_001394234.1:p.Asn708Thr
  • NP_001394235.1:p.Asn708Thr
  • NP_001394236.1:p.Asn654Thr
  • NP_001394237.1:p.Asn708Thr
  • NP_001394238.1:p.Asn708Thr
  • NP_001394239.1:p.Asn708Thr
  • NP_001394240.1:p.Asn708Thr
  • NP_001394241.1:p.Asn407Thr
  • NP_001394242.1:p.Asn407Thr
  • NP_001394243.1:p.Asn181Thr
  • NP_078951.2:p.Asn1003Thr
  • NP_078951.2:p.Asn1003Thr
  • LRG_308t1:c.3008A>C
  • LRG_308:g.24891A>C
  • LRG_308p1:p.Asn1003Thr
  • NC_000016.9:g.23632788T>G
  • NM_024675.3:c.3008A>C
Protein change:
N1003T
Molecular consequence:
  • NM_001407300.1:c.2834+2542A>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001407296.1:c.2948A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407297.1:c.2936A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407298.1:c.2846A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407299.1:c.3008A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407301.1:c.3008A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407302.1:c.2846A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407304.1:c.2123A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407305.1:c.2123A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407306.1:c.2123A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407307.1:c.1961A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407308.1:c.2123A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407309.1:c.2123A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407310.1:c.2123A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407311.1:c.2123A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407312.1:c.1220A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407313.1:c.1220A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407314.1:c.542A>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_024675.4:c.3008A>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Hereditary cancer-predisposing syndrome
Synonyms:
Neoplastic Syndromes, Hereditary; Tumor predisposition; Cancer predisposition; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0015356; MeSH: D009386; MedGen: C0027672

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV003855719Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Uncertain significance
(Dec 27, 2022) 		germlineclinical testing

Citation Link

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV003855719.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The p.N1003T variant (also known as c.3008A>C), located in coding exon 10 of the PALB2 gene, results from an A to C substitution at nucleotide position 3008. The asparagine at codon 1003 is replaced by threonine, an amino acid with similar properties. This amino acid position is conserved. In addition, this alteration is predicted to be tolerated by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 1, 2024