NM_000147.5(FUCA1):c.1138G>T (p.Glu380Ter) AND not provided

Germline classification:: Pathogenic (1 submission)
Last evaluated:: Mar 28, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV003159089.1

Allele description [Variation Report for NM_000147.5(FUCA1):c.1138G>T (p.Glu380Ter)]

NM_000147.5(FUCA1):c.1138G>T (p.Glu380Ter)

Gene:

FUCA1:alpha-L-fucosidase 1 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

1p36.11

Genomic location:

Preferred name:

NM_000147.5(FUCA1):c.1138G>T (p.Glu380Ter)

Other names:

FUCA1, GLU375TER

HGVS:

NC_000001.11:g.23848671C>A
NG_013346.1:g.24699G>T
NM_000147.5:c.1138G>TMANE SELECT
NP_000138.2:p.Glu380Ter
NP_000138.2:p.Glu380Ter
NC_000001.10:g.24175161C>A
NM_000147.4:c.1138G>T

Note:

NCBI staff reviewed the sequence information reported in PubMed 1281988 to determine the location of this allele on current reference sequence (E380*).

Protein change:

E380*

Links:

OMIM: 612280.0003; dbSNP: rs80358195

NCBI 1000 Genomes Browser:

rs80358195

Molecular consequence:

NM_000147.5:c.1138G>T - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

Recent activity

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Human mitogen induced nuclear orphan receptor (MINOR) mRNA, complete cds
Human mitogen induced nuclear orphan receptor (MINOR) mRNA, complete cds
gi|924281|gb|U12767.1|HSU12767

Nucleotide

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV003852911	GeneDx	criteria provided, single submitter (GeneDx Variant Classification Process June 2021)	Pathogenic (Mar 28, 2023)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV003852911

GeneDx

criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)

Pathogenic
(Mar 28, 2023)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From GeneDx, SCV003852911.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

Not observed at significant frequency in large population cohorts (gnomAD); Nonsense variant predicted to result in protein truncation or nonsense mediated decay in a gene for which loss of function is a known mechanism of disease; This variant is associated with the following publications: (PMID: 25525159, 2803224, 1281988, 8739734, 8504303)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Oct 26, 2024

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