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NM_000258.3(MYL3):c.235G>A (p.Val79Ile) AND not specified

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Feb 14, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003155086.1

Allele description [Variation Report for NM_000258.3(MYL3):c.235G>A (p.Val79Ile)]

NM_000258.3(MYL3):c.235G>A (p.Val79Ile)

Gene:
MYL3:myosin light chain 3 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
3p21.31
Genomic location:
Preferred name:
NM_000258.3(MYL3):c.235G>A (p.Val79Ile)
HGVS:
  • NC_000003.12:g.46860748C>T
  • NG_007555.2:g.26422G>A
  • NM_000258.3:c.235G>AMANE SELECT
  • NP_000249.1:p.Val79Ile
  • NP_000249.1:p.Val79Ile
  • LRG_395t1:c.235G>A
  • LRG_395:g.26422G>A
  • LRG_395p1:p.Val79Ile
  • NC_000003.11:g.46902238C>T
  • NM_000258.2:c.235G>A
Protein change:
V79I
Links:
dbSNP: rs150634297
NCBI 1000 Genomes Browser:
rs150634297
Molecular consequence:
  • NM_000258.3:c.235G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV003844680Women's Health and Genetics/Laboratory Corporation of America, LabCorp
criteria provided, single submitter

(LabCorp Variant Classification Summary - May 2015)
Uncertain significance
(Feb 14, 2023)
germlineclinical testing

PubMed (3)
[See all records that cite these PMIDs]

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

The implications of familial incidental findings from exome sequencing: the NIH Undiagnosed Diseases Program experience.

Lawrence L, Sincan M, Markello T, Adams DR, Gill F, Godfrey R, Golas G, Groden C, Landis D, Nehrebecky M, Park G, Soldatos A, Tifft C, Toro C, Wahl C, Wolfe L, Gahl WA, Boerkoel CF.

Genet Med. 2014 Oct;16(10):741-50. doi: 10.1038/gim.2014.29. Epub 2014 May 1.

PubMed [citation]
PMID:
24784157
PMCID:
PMC4190001

A novel Myosin essential light chain mutation causes hypertrophic cardiomyopathy with late onset and low expressivity.

Andersen PS, Hedley PL, Page SP, Syrris P, Moolman-Smook JC, McKenna WJ, Elliott PM, Christiansen M.

Biochem Res Int. 2012;2012:685108. doi: 10.1155/2012/685108. Epub 2012 Apr 11.

PubMed [citation]
PMID:
22957257
PMCID:
PMC3432877
See all PubMed Citations (3)

Details of each submission

From Women's Health and Genetics/Laboratory Corporation of America, LabCorp, SCV003844680.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (3)

Description

Variant summary: MYL3 c.235G>A (p.Val79Ile) results in a conservative amino acid change in the encoded protein sequence. Four of five in-silico tools predict a benign effect of the variant on protein function. The variant allele was found at a frequency of 2.8e-05 in 251470 control chromosomes. The available data on variant occurrences in the general population are insufficient to allow any conclusion about variant significance. c.235G>A has been reported in the literature as segregating with disease in at least one family, in which one heterozygous individual was diagnosed with asymptomatic hypertrophic cardiomyopathy (HCM) and 3 additional heterozygotes displayed borderline HCM; unaffected heterozygous carriers in the family were under the age of 30, suggesting this variant may cause late-onset and clinically silent disease (Andersen_2012). Therefore, this report does not provide unequivocal conclusions about association of the variant with Hypertrophic Cardiomyopathy. To our knowledge, no experimental evidence demonstrating an impact on protein function has been reported. Five ClinVar submitters (evaluation after 2014) have cited the variant, and all laboratories classified the variant as uncertain significance. Based on the evidence outlined above, the variant was classified as VUS-possibly pathogenic.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024