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NM_003545.4(H4C5):c.136C>T (p.Arg46Cys) AND Tessadori-Van Haaften neurodevelopmental syndrome 3

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jan 20, 2023
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003152614.2

Allele description [Variation Report for NM_003545.4(H4C5):c.136C>T (p.Arg46Cys)]

NM_003545.4(H4C5):c.136C>T (p.Arg46Cys)

Genes:
LOC129996027:ATAC-STARR-seq lymphoblastoid active region 24208 [Gene]
H4C5:H4 clustered histone 5 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
6p22.2
Genomic location:
Preferred name:
NM_003545.4(H4C5):c.136C>T (p.Arg46Cys)
Other names:
H4C5, ARG46CYS
HGVS:
  • NC_000006.12:g.26204780C>T
  • NM_003545.4:c.136C>TMANE SELECT
  • NP_003536.1:p.Arg46Cys
  • NC_000006.11:g.26205008C>T
  • NM_003545.3:c.136C>T
Protein change:
R46C; ARG46CYS
Links:
OMIM: 602830.0004; dbSNP: rs950721550
NCBI 1000 Genomes Browser:
rs950721550
Molecular consequence:
  • NM_003545.4:c.136C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Tessadori-Van Haaften neurodevelopmental syndrome 3 (TEBIVANED3)
Identifiers:
MONDO: MONDO:0030993; MedGen: C5774310; OMIM: 619950

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV003841062OMIM
no assertion criteria provided
Pathogenic
(Jan 20, 2023)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Recurrent de novo missense variants across multiple histone H4 genes underlie a neurodevelopmental syndrome.

Tessadori F, Duran K, Knapp K, Fellner M; Deciphering Developmental Disorders Study., Smithson S, Beleza Meireles A, Elting MW, Waisfisz Q, O'Donnell-Luria A, Nowak C, Douglas J, Ronan A, Brunet T, Kotzaeridou U, Svihovec S, Saenz MS, Thiffault I, Del Viso F, Devine P, Rego S, Tenney J, et al.

Am J Hum Genet. 2022 Apr 7;109(4):750-758. doi: 10.1016/j.ajhg.2022.02.003. Epub 2022 Feb 23.

PubMed [citation]
PMID:
35202563
PMCID:
PMC9069069

Details of each submission

From OMIM, SCV003841062.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

In 7 unrelated patients (P16-P22) with Tessadori-Bicknell-van Haaften neurodevelopmental syndrome-3 (TEBIVANED3; 619950), Tessadori et al. (2022) identified a de novo heterozygous c.136C-T transition (c.136C-T, NM_003545.3) in the H4C5 gene, resulting in an arg46-to-cys (R46C) substitution at a conserved residue in the core globular domain. The mutation, which was found by exome sequencing, was not present in the gnomAD database. Expression of the mutation in zebrafish embryos induced mild developmental defects that just reached significance (p less that 0.05), suggesting that it may be pathogenic. The authors postulated a dominant effect. The patients had poor overall growth and global developmental delay, but there was phenotypic heterogeneity. The authors also referred to this mutation as ARG45CYS (R45C), reflecting the practice of dropping the numbering of the first posttranslationally removed methionine.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 12, 2024