NM_015087.5(SPART):c.1294del (p.Ser432fs) AND Troyer syndrome

Germline classification:: Pathogenic (1 submission)
Last evaluated:: Jan 4, 2022
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV003147629.1

Allele description [Variation Report for NM_015087.5(SPART):c.1294del (p.Ser432fs)]

NM_015087.5(SPART):c.1294del (p.Ser432fs)

Gene:

SPART:spartin [Gene - OMIM - HGNC]

Variant type:

Deletion

Cytogenetic location:

13q13.3

Genomic location:

Preferred name:

NM_015087.5(SPART):c.1294del (p.Ser432fs)

HGVS:

NC_000013.11:g.36314417del
NG_011559.2:g.60765del
NM_001142294.2:c.1294del
NM_001142295.2:c.1294del
NM_001142296.2:c.1294del
NM_015087.5:c.1294delMANE SELECT
NP_001135766.1:p.Ser432fs
NP_001135767.1:p.Ser432fs
NP_001135768.1:p.Ser432fs
NP_055902.1:p.Ser432fs
NC_000013.10:g.36888553del
NC_000013.10:g.36888554del

Protein change:

S432fs

Links:

dbSNP: rs2137335988

NCBI 1000 Genomes Browser:

rs2137335988

Molecular consequence:

NM_001142294.2:c.1294del - frameshift variant - [Sequence Ontology: SO:0001589]
NM_001142295.2:c.1294del - frameshift variant - [Sequence Ontology: SO:0001589]
NM_001142296.2:c.1294del - frameshift variant - [Sequence Ontology: SO:0001589]
NM_015087.5:c.1294del - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Name:: Troyer syndrome (SPG20)
Synonyms:: Spastic paraplegia 20; Spastic paraparesis childhood-onset with distal muscle wasting; Spastic paraplegia autosomal recessive Troyer type; See all synonyms [MedGen]
Identifiers:: MONDO: MONDO:0010156; MedGen: C0393559; Orphanet: 101000; OMIM: 275900

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV003836117	Baylor Genetics	criteria provided, single submitter (ACMG Guidelines, 2015)	Pathogenic (Jan 4, 2022)	unknown	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV003836117

Baylor Genetics

criteria provided, single submitter

(ACMG Guidelines, 2015)

Pathogenic
(Jan 4, 2022)

unknown

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	unknown	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Baylor Genetics, SCV003836117.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	unknown	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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