NM_017882.3(CLN6):c.406C>T (p.Arg136Cys) AND not provided

Germline classification:: no classifications from unflagged records (1 submission)
Last evaluated:: Apr 11, 2024
Review status:: no classifications from unflagged records

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV003145176.4

Allele description [Variation Report for NM_017882.3(CLN6):c.406C>T (p.Arg136Cys)]

NM_017882.3(CLN6):c.406C>T (p.Arg136Cys)

Gene:

CLN6:CLN6 transmembrane ER protein [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

15q23

Genomic location:

Preferred name:

NM_017882.3(CLN6):c.406C>T (p.Arg136Cys)

HGVS:

NC_000015.10:g.68211755G>A
NG_008764.2:g.50457C>T
NM_017882.3:c.406C>TMANE SELECT
NP_060352.1:p.Arg136Cys
LRG_832t1:c.406C>T
LRG_832:g.50457C>T
LRG_832p1:p.Arg136Cys
NC_000015.9:g.68504093G>A
NM_017882.2:c.406C>T

Protein change:

R136C

Links:

dbSNP: rs1012449574

NCBI 1000 Genomes Browser:

rs1012449574

Molecular consequence:

NM_017882.3:c.406C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

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No clinical assertions found. See "Flagged submissions" below.

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Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Revvity Omics, Revvity, SCV003832407.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Flagged submissions

Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV003832407	Revvity Omics, Revvity	flagged submission Reason: Older claim that does not account for recent evidence Notes: None (ACMG Guidelines, 2015)	Uncertain significance (Jul 30, 2020)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV003832407

Revvity Omics, Revvity

flagged submission

Reason: Older claim that does not account for recent evidence

Notes: None

(ACMG Guidelines, 2015)

Uncertain significance
(Jul 30, 2020)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Last Updated: Sep 29, 2024

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