U.S. flag

An official website of the United States government

NM_001352514.2(HLCS):c.1148A>G (p.Tyr383Cys) AND Holocarboxylase synthetase deficiency

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Aug 20, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003135589.3

Allele description [Variation Report for NM_001352514.2(HLCS):c.1148A>G (p.Tyr383Cys)]

NM_001352514.2(HLCS):c.1148A>G (p.Tyr383Cys)

Gene:
HLCS:holocarboxylase synthetase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
21q22.13
Genomic location:
Preferred name:
NM_001352514.2(HLCS):c.1148A>G (p.Tyr383Cys)
HGVS:
  • NC_000021.9:g.36936738T>C
  • NG_016193.2:g.58657A>G
  • NM_000411.8:c.707A>G
  • NM_001242784.3:c.707A>G
  • NM_001242785.2:c.707A>G
  • NM_001352514.2:c.1148A>GMANE SELECT
  • NM_001352515.2:c.707A>G
  • NM_001352516.2:c.707A>G
  • NM_001352517.1:c.707A>G
  • NM_001352518.2:c.707A>G
  • NP_000402.3:p.Tyr236Cys
  • NP_001229713.1:p.Tyr236Cys
  • NP_001229714.1:p.Tyr236Cys
  • NP_001339443.1:p.Tyr383Cys
  • NP_001339444.1:p.Tyr236Cys
  • NP_001339445.1:p.Tyr236Cys
  • NP_001339446.1:p.Tyr236Cys
  • NP_001339447.1:p.Tyr236Cys
  • NC_000021.8:g.38309038T>C
  • NR_148020.2:n.1007A>G
  • NR_148021.1:n.1164A>G
Protein change:
Y236C
Molecular consequence:
  • NM_000411.8:c.707A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001242784.3:c.707A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001242785.2:c.707A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001352514.2:c.1148A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001352515.2:c.707A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001352516.2:c.707A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001352517.1:c.707A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001352518.2:c.707A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NR_148020.2:n.1007A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_148021.1:n.1164A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:
Holocarboxylase synthetase deficiency
Synonyms:
MULTIPLE CARBOXYLASE DEFICIENCY, EARLY ONSET
Identifiers:
MONDO: MONDO:0009666; MedGen: C0268581; Orphanet: 79242; OMIM: 253270

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV003813233Revvity Omics, Revvity
criteria provided, single submitter

(ACMG Guidelines, 2015)		Uncertain significance
(Aug 20, 2021) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Revvity Omics, Revvity, SCV003813233.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Mar 16, 2024