NM_000169.3(GLA):c.145C>A (p.Arg49Ser) AND not provided

Germline classification:: Likely pathogenic (1 submission)
Last evaluated:: Dec 20, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV003135372.3

Allele description [Variation Report for NM_000169.3(GLA):c.145C>A (p.Arg49Ser)]

NM_000169.3(GLA):c.145C>A (p.Arg49Ser)

Genes:

RPL36A-HNRNPH2:RPL36A-HNRNPH2 readthrough [Gene - HGNC]
GLA:galactosidase alpha [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

Xq22.1

Genomic location:

Preferred name:

NM_000169.3(GLA):c.145C>A (p.Arg49Ser)

HGVS:

NC_000023.11:g.101407759G>T
NG_007119.1:g.5205C>A
NG_016327.1:g.4557G>T
NM_000169.3:c.145C>AMANE SELECT
NM_001199973.2:c.301-4177G>T
NM_001199974.2:c.178-4177G>T
NM_001406747.1:c.145C>A
NM_001406748.1:c.145C>A
NM_001406749.1:c.145C>A
NP_000160.1:p.Arg49Ser
NP_000160.1:p.Arg49Ser
NP_001393676.1:p.Arg49Ser
NP_001393677.1:p.Arg49Ser
NP_001393678.1:p.Arg49Ser
LRG_672t1:c.145C>A
LRG_672:g.5205C>A
LRG_672p1:p.Arg49Ser
NC_000023.10:g.100662747G>T
NM_000169.2:c.145C>A
NR_164783.1:n.167C>A
NR_176252.1:n.167C>A
NR_176253.1:n.167C>A

Protein change:

R49S

Molecular consequence:

NM_001199973.2:c.301-4177G>T - intron variant - [Sequence Ontology: SO:0001627]
NM_001199974.2:c.178-4177G>T - intron variant - [Sequence Ontology: SO:0001627]
NM_000169.3:c.145C>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001406747.1:c.145C>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001406748.1:c.145C>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001406749.1:c.145C>A - missense variant - [Sequence Ontology: SO:0001583]
NR_164783.1:n.167C>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_176252.1:n.167C>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_176253.1:n.167C>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

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LHX4-AS1 LHX4 antisense RNA 1 [Homo sapiens]
LHX4-AS1 LHX4 antisense RNA 1 [Homo sapiens]
Gene ID:100527964

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV003816848	Revvity Omics, Revvity	criteria provided, single submitter (ACMG Guidelines, 2015)	Likely pathogenic (Dec 20, 2023)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV003816848

Revvity Omics, Revvity

criteria provided, single submitter

(ACMG Guidelines, 2015)

Likely pathogenic
(Dec 20, 2023)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Revvity Omics, Revvity, SCV003816848.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 1, 2024

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