NM_138711.6(PPARG):c.-8-28104A>G AND not provided

This record was updated by the submitter. Please see the current version.

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Oct 13, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV003061812.3

Allele description

NM_138711.6(PPARG):c.-8-28104A>G

Gene:

PPARG:peroxisome proliferator activated receptor gamma [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

3p25.2

Genomic location:

Preferred name:

NM_138711.6(PPARG):c.-8-28104A>G

HGVS:

NC_000003.12:g.12351600A>G
NG_011749.1:g.68751A>G
NM_001330615.4:c.-8-28104A>G
NM_001354666.3:c.-8-28104A>G
NM_001354667.3:c.-8-28104A>G
NM_001354668.2:c.8A>G
NM_001354669.2:c.-435-28104A>G
NM_001354670.2:c.-2-28104A>G
NM_001374261.3:c.-8-28104A>G
NM_001374262.3:c.-9+6706A>G
NM_001374263.2:c.-8-28104A>G
NM_001374264.2:c.-8-28104A>G
NM_001374265.1:c.8A>G
NM_001374266.1:c.-2-28104A>G
NM_005037.7:c.-8-28104A>G
NM_015869.5:c.8A>G
NM_138711.6:c.-8-28104A>GMANE SELECT
NM_138712.5:c.-8-28104A>G
NP_001341597.1:p.Glu3Gly
NP_001361194.1:p.Glu3Gly
NP_056953.2:p.Glu3Gly
NC_000003.11:g.12393099A>G

Protein change:

E3G

Molecular consequence:

NM_001330615.4:c.-8-28104A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001354666.3:c.-8-28104A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001354667.3:c.-8-28104A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001354669.2:c.-435-28104A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001354670.2:c.-2-28104A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001374261.3:c.-8-28104A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001374262.3:c.-9+6706A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001374263.2:c.-8-28104A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001374264.2:c.-8-28104A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001374266.1:c.-2-28104A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_005037.7:c.-8-28104A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_138711.6:c.-8-28104A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_138712.5:c.-8-28104A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001354668.2:c.8A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001374265.1:c.8A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_015869.5:c.8A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

Help

Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV003349709	Invitae	criteria provided, single submitter (Invitae Variant Classification Sherloc (09022015))	Uncertain significance (Oct 13, 2023)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV003349709

Invitae

criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))

Uncertain significance
(Oct 13, 2023)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]

PMID:: 28492532
PMCID:: PMC5632818

Details of each submission

From Invitae, SCV003349709.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

Description

This sequence change replaces glutamic acid, which is acidic and polar, with glycine, which is neutral and non-polar, at codon 3 of the PPARG protein (p.Glu3Gly). This variant is not present in population databases (gnomAD no frequency). This variant has not been reported in the literature in individuals affected with PPARG-related conditions. ClinVar contains an entry for this variant (Variation ID: 2130883). An algorithm developed to predict the effect of missense changes on protein structure and function (PolyPhen-2) suggests that this variant¬†is likely to be tolerated. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Jun 23, 2024

ClinVar

Relating variation to medicine