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NM_000054.7(AVPR2):c.320G>A (p.Gly107Glu) AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Oct 24, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003050676.3

Allele description [Variation Report for NM_000054.7(AVPR2):c.320G>A (p.Gly107Glu)]

NM_000054.7(AVPR2):c.320G>A (p.Gly107Glu)

Gene:
AVPR2:arginine vasopressin receptor 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
Xq28
Genomic location:
Preferred name:
NM_000054.7(AVPR2):c.320G>A (p.Gly107Glu)
HGVS:
  • NC_000023.11:g.153905826G>A
  • NG_008687.1:g.5853G>A
  • NG_013220.2:g.25438C>T
  • NM_000054.7:c.320G>AMANE SELECT
  • NM_001146151.3:c.320G>A
  • NP_000045.1:p.Gly107Glu
  • NP_001139623.1:p.Gly107Glu
  • LRG_716t1:c.320G>A
  • LRG_716:g.5853G>A
  • LRG_716p1:p.Gly107Glu
  • NC_000023.10:g.153171280G>A
  • NG_013220.1:g.25435C>T
Protein change:
G107E
Molecular consequence:
  • NM_000054.7:c.320G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001146151.3:c.320G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV003445952Labcorp Genetics (formerly Invitae), Labcorp
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Uncertain significance
(Oct 24, 2022)
germlineclinical testing

PubMed (4)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Functional characterization of novel loss-of-function mutations in the vasopressin type 2 receptor gene causing nephrogenic diabetes insipidus.

Böselt I, Tramma D, Kalamitsou S, Niemeyer T, Nykänen P, Gräf KJ, Krude H, Marenzi KS, Di Candia S, Schöneberg T, Schulz A.

Nephrol Dial Transplant. 2012 Apr;27(4):1521-8. doi: 10.1093/ndt/gfr487. Epub 2011 Sep 13.

PubMed [citation]
PMID:
21917732

A novel mutation of the arginine vasopressin receptor 2 gene in a patient with congenital nephrogenic diabetes insipidus.

Tajima A, Miyata I, Katayama A, Toyoda S, Eto Y.

Clin Pediatr Endocrinol. 2005;14(1):27-33. doi: 10.1297/cpe.14.27. Epub 2005 Feb 14.

PubMed [citation]
PMID:
24790307
PMCID:
PMC4004929
See all PubMed Citations (4)

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV003445952.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (4)

Description

Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is expected to disrupt AVPR2 protein function. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. This variant disrupts the p.Gly107 amino acid residue in AVPR2. Other variant(s) that disrupt this residue have been observed in individuals with AVPR2-related conditions (PMID: 21917732, 24790307), which suggests that this may be a clinically significant amino acid residue. This missense change has been observed in individual(s) with congenital nephrogenic diabetes insipidus (PMID: 9402087). This variant is not present in population databases (gnomAD no frequency). This sequence change replaces glycine, which is neutral and non-polar, with glutamic acid, which is acidic and polar, at codon 107 of the AVPR2 protein (p.Gly107Glu).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024