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NM_000166.6(GJB1):c.5A>G (p.Asn2Ser) AND Charcot-Marie-Tooth Neuropathy X

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Oct 3, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003050622.3

Allele description [Variation Report for NM_000166.6(GJB1):c.5A>G (p.Asn2Ser)]

NM_000166.6(GJB1):c.5A>G (p.Asn2Ser)

Gene:
GJB1:gap junction protein beta 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
Xq13.1
Genomic location:
Preferred name:
NM_000166.6(GJB1):c.5A>G (p.Asn2Ser)
HGVS:
  • NC_000023.11:g.71223712A>G
  • NG_008357.1:g.13501A>G
  • NM_000166.6:c.5A>GMANE SELECT
  • NM_001097642.3:c.5A>G
  • NP_000157.1:p.Asn2Ser
  • NP_001091111.1:p.Asn2Ser
  • NP_001091111.1:p.Asn2Ser
  • LRG_245t1:c.5A>G
  • LRG_245t2:c.5A>G
  • LRG_245:g.13501A>G
  • LRG_245p1:p.Asn2Ser
  • LRG_245p2:p.Asn2Ser
  • NC_000023.10:g.70443562A>G
  • NM_001097642.2:c.5A>G
Protein change:
N2S
Molecular consequence:
  • NM_000166.6:c.5A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001097642.3:c.5A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Charcot-Marie-Tooth Neuropathy X
Identifiers:
MedGen: CN118851

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV003445085Labcorp Genetics (formerly Invitae), Labcorp
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Uncertain significance
(Oct 3, 2022)
germlineclinical testing

PubMed (3)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

A novel mutation of gap junction protein β 1 gene in X-linked Charcot-Marie-Tooth disease.

Chen SD, Li ZX, Guan YT, Zhou XJ, Jiang JM, Hao Y.

Muscle Nerve. 2011 Jun;43(6):887-92. doi: 10.1002/mus.21992.

PubMed [citation]
PMID:
21607969

Phenotypes and cellular effects of GJB1 mutations causing CMT1X in a cohort of 226 Chinese CMT families.

Liu L, Li XB, Hu ZHM, Zi XH, Zhao X, Xie YZ, Huang SHX, Xia K, Tang BS, Zhang RX.

Clin Genet. 2017 Jun;91(6):881-891. doi: 10.1111/cge.12913. Epub 2017 Mar 8.

PubMed [citation]
PMID:
27804109
See all PubMed Citations (3)

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV003445085.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (3)

Description

In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. This variant disrupts the p.Asn2 amino acid residue in GJB1. Other variant(s) that disrupt this residue have been observed in individuals with GJB1-related conditions (PMID: 21607969), which suggests that this may be a clinically significant amino acid residue. Experimental studies have shown that this missense change affects GJB1 function (PMID: 27804109). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt GJB1 protein function. This missense change has been observed in individual(s) with Charcot-Marie-Tooth disease (PMID: 27804109). It has also been observed to segregate with disease in related individuals. This variant is not present in population databases (gnomAD no frequency). This sequence change replaces asparagine, which is neutral and polar, with serine, which is neutral and polar, at codon 2 of the GJB1 protein (p.Asn2Ser).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 8, 2024