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NM_000016.6(ACADM):c.584G>A (p.Gly195Glu) AND Medium-chain acyl-coenzyme A dehydrogenase deficiency

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Nov 19, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003034578.3

Allele description [Variation Report for NM_000016.6(ACADM):c.584G>A (p.Gly195Glu)]

NM_000016.6(ACADM):c.584G>A (p.Gly195Glu)

Gene:
ACADM:acyl-CoA dehydrogenase medium chain [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1p31.1
Genomic location:
Preferred name:
NM_000016.6(ACADM):c.584G>A (p.Gly195Glu)
HGVS:
  • NC_000001.11:g.75740095G>A
  • NG_007045.2:g.20738G>A
  • NM_000016.6:c.584G>AMANE SELECT
  • NM_001127328.3:c.596G>A
  • NM_001286042.2:c.476G>A
  • NM_001286043.2:c.683G>A
  • NM_001286044.2:c.17G>A
  • NP_000007.1:p.Gly195Glu
  • NP_000007.1:p.Gly195Glu
  • NP_001120800.1:p.Gly199Glu
  • NP_001272971.1:p.Gly159Glu
  • NP_001272972.1:p.Gly228Glu
  • NP_001272973.1:p.Gly6Glu
  • LRG_838t1:c.584G>A
  • LRG_838:g.20738G>A
  • LRG_838p1:p.Gly195Glu
  • NC_000001.10:g.76205780G>A
  • NM_000016.5:c.584G>A
Protein change:
G159E
Molecular consequence:
  • NM_000016.6:c.584G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001127328.3:c.596G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001286042.2:c.476G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001286043.2:c.683G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001286044.2:c.17G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Medium-chain acyl-coenzyme A dehydrogenase deficiency (ACADMD)
Synonyms:
CARNITINE DEFICIENCY SECONDARY TO MEDIUM-CHAIN ACYL-CoA DEHYDROGENASE DEFICIENCY; MCADD; Medium chain acyl-CoA dehydrogenase deficiency
Identifiers:
MONDO: MONDO:0008721; MedGen: C0220710; Orphanet: 42; OMIM: 201450

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV003328259Labcorp Genetics (formerly Invitae), Labcorp
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Likely pathogenic
(Nov 19, 2023)
germlineclinical testing

PubMed (4)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Medium chain acyl-CoA dehydrogenase deficiency in Pennsylvania: neonatal screening shows high incidence and unexpected mutation frequencies.

Ziadeh R, Hoffman EP, Finegold DN, Hoop RC, Brackett JC, Strauss AW, Naylor EW.

Pediatr Res. 1995 May;37(5):675-8.

PubMed [citation]
PMID:
7603790

Medium-chain acyl-CoA dehydrogenase deficiency: genotype-biochemical phenotype correlations.

Waddell L, Wiley V, Carpenter K, Bennetts B, Angel L, Andresen BS, Wilcken B.

Mol Genet Metab. 2006 Jan;87(1):32-9. Epub 2005 Nov 15.

PubMed [citation]
PMID:
16291504
See all PubMed Citations (4)

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV003328259.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (4)

Description

This sequence change replaces glycine, which is neutral and non-polar, with glutamic acid, which is acidic and polar, at codon 195 of the ACADM protein (p.Gly195Glu). This variant is not present in population databases (gnomAD no frequency). This variant has not been reported in the literature in individuals affected with ACADM-related conditions. ClinVar contains an entry for this variant (Variation ID: 2112467). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is expected to disrupt ACADM protein function with a positive predictive value of 80%. This variant disrupts the p.Gly195 amino acid residue in ACADM. Other variant(s) that disrupt this residue have been determined to be pathogenic (PMID: 7603790, 16291504, 25940036). This suggests that this residue is clinically significant, and that variants that disrupt this residue are likely to be disease-causing. In summary, the currently available evidence indicates that the variant is pathogenic, but additional data are needed to prove that conclusively. Therefore, this variant has been classified as Likely Pathogenic.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024