NM_000282.4(PCCA):c.1354-14T>G AND Propionic acidemia

Germline classification:: Likely benign (1 submission)
Last evaluated:: Sep 4, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV003010120.3

Allele description [Variation Report for NM_000282.4(PCCA):c.1354-14T>G]

NM_000282.4(PCCA):c.1354-14T>G

Gene:

PCCA:propionyl-CoA carboxylase subunit alpha [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

13q32.3

Genomic location:

Preferred name:

NM_000282.4(PCCA):c.1354-14T>G

HGVS:

NC_000013.11:g.100309819T>G
NG_008768.1:g.225737T>G
NM_000282.4:c.1354-14T>GMANE SELECT
NM_001127692.3:c.1276-14T>G
NM_001178004.2:c.1354-14T>G
NM_001352605.2:c.1354-14T>G
NM_001352606.2:c.1210-14T>G
NM_001352607.2:c.1276-14T>G
NM_001352608.2:c.1132-14T>G
NM_001352609.2:c.1354-14T>G
NM_001352610.2:c.409-14T>G
NM_001352611.2:c.409-14T>G
NM_001352612.2:c.265-14T>G
NC_000013.10:g.100962073T>G

Molecular consequence:

NM_000282.4:c.1354-14T>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001127692.3:c.1276-14T>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001178004.2:c.1354-14T>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001352605.2:c.1354-14T>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001352606.2:c.1210-14T>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001352607.2:c.1276-14T>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001352608.2:c.1132-14T>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001352609.2:c.1354-14T>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001352610.2:c.409-14T>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001352611.2:c.409-14T>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001352612.2:c.265-14T>G - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Name:: Propionic acidemia (PROP)
Synonyms:: Glycinemia, ketotic; Hyperglycinemia with ketoacidosis and leukopenia; Ketotic hyperglycinemia
Identifiers:: MONDO: MONDO:0011628; MedGen: C0268579; Orphanet: 35; OMIM: 606054; Human Phenotype Ontology: HP:0003571

Recent activity

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Mus musculus RIKEN cDNA 3110040M04 gene (3110040M04Rik), mRNA
Mus musculus RIKEN cDNA 3110040M04 gene (3110040M04Rik), mRNA
gi|1732428754|ref|NM_001372355.1|

Nucleotide
formate--tetrahydrofolate ligase [Globicatella sp. HMSC072A10]
formate--tetrahydrofolate ligase [Globicatella sp. HMSC072A10]
gi|1080268113|gb|OFK60858.1||gnl|WG S|HMPREF2811_00355

Protein
GRAM domain-containing protein 2B isoform 6 [Homo sapiens]
GRAM domain-containing protein 2B isoform 6 [Homo sapiens]
gi|1160595259|ref|NP_001336470.1|

Protein
zo30d02.s1 Stratagene colon (#937204) Homo sapiens cDNA clone IMAGE:588387 3', m...
zo30d02.s1 Stratagene colon (#937204) Homo sapiens cDNA clone IMAGE:588387 3', mRNA sequence
gi|1720413|gnl|dbEST|788803|gb|AA14 1|

Nucleotide
aminopeptidase O isoform X9 [Homo sapiens]
aminopeptidase O isoform X9 [Homo sapiens]
gi|2462626929|ref|XP_054220016.1|

Protein

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV003307622	Labcorp Genetics (formerly Invitae), Labcorp	criteria provided, single submitter (Invitae Variant Classification Sherloc (09022015))	Likely benign (Sep 4, 2023)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV003307622

Labcorp Genetics (formerly Invitae), Labcorp

criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))

Likely benign
(Sep 4, 2023)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]

PMID:: 28492532
PMCID:: PMC5632818

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV003307622.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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