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NM_001289104.2(PRKCSH):c.1000G>T (p.Asp334Tyr) AND Inborn genetic diseases

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Dec 2, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002925334.2

Allele description [Variation Report for NM_001289104.2(PRKCSH):c.1000G>T (p.Asp334Tyr)]

NM_001289104.2(PRKCSH):c.1000G>T (p.Asp334Tyr)

Gene:
PRKCSH:PRKCSH beta subunit of glucosidase II [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19p13.2
Genomic location:
Preferred name:
NM_001289104.2(PRKCSH):c.1000G>T (p.Asp334Tyr)
HGVS:
  • NC_000019.10:g.11447589G>T
  • NG_009300.1:g.17136G>T
  • NG_009300.2:g.16956G>T
  • NM_001001329.3:c.1000G>T
  • NM_001289102.2:c.1000G>T
  • NM_001289103.2:c.1000G>T
  • NM_001289104.2:c.1000G>TMANE SELECT
  • NM_001379608.1:c.1000G>T
  • NM_001379609.1:c.1000G>T
  • NM_002743.3:c.1000G>T
  • NP_001001329.1:p.Asp334Tyr
  • NP_001276031.1:p.Asp334Tyr
  • NP_001276032.1:p.Asp334Tyr
  • NP_001276033.1:p.Asp334Tyr
  • NP_001366537.1:p.Asp334Tyr
  • NP_001366538.1:p.Asp334Tyr
  • NP_002734.2:p.Asp334Tyr
  • NC_000019.9:g.11558404G>T
  • NM_002743.2:c.1000G>T
Protein change:
D334Y
Molecular consequence:
  • NM_001001329.3:c.1000G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001289102.2:c.1000G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001289103.2:c.1000G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001289104.2:c.1000G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001379608.1:c.1000G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001379609.1:c.1000G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_002743.3:c.1000G>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Inborn genetic diseases
Identifiers:
MeSH: D030342; MedGen: C0950123

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV003668180Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Uncertain significance
(Dec 2, 2022) 		germlineclinical testing

Citation Link

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Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV003668180.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The c.1000G>T (p.D334Y) alteration is located in exon 11 (coding exon 10) of the PRKCSH gene. This alteration results from a G to T substitution at nucleotide position 1000, causing the aspartic acid (D) at amino acid position 334 to be replaced by a tyrosine (Y). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 1, 2024