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NM_000540.3(RYR1):c.7007G>T (p.Arg2336Leu) AND RYR1-related disorder

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Dec 9, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002895060.2

Allele description [Variation Report for NM_000540.3(RYR1):c.7007G>T (p.Arg2336Leu)]

NM_000540.3(RYR1):c.7007G>T (p.Arg2336Leu)

Gene:
RYR1:ryanodine receptor 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19q13.2
Genomic location:
Preferred name:
NM_000540.3(RYR1):c.7007G>T (p.Arg2336Leu)
HGVS:
  • NC_000019.10:g.38499223G>T
  • NG_008866.1:g.70524G>T
  • NM_000540.3:c.7007G>TMANE SELECT
  • NM_001042723.2:c.7007G>T
  • NP_000531.2:p.Arg2336Leu
  • NP_000531.2:p.Arg2336Leu
  • NP_001036188.1:p.Arg2336Leu
  • LRG_766t1:c.7007G>T
  • LRG_766:g.70524G>T
  • LRG_766p1:p.Arg2336Leu
  • NC_000019.9:g.38989863G>T
  • NM_000540.2:c.7007G>T
Protein change:
R2336L
Molecular consequence:
  • NM_000540.3:c.7007G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001042723.2:c.7007G>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
RYR1-related disorder
Synonyms:
RYR1-Related Disorders; RYR1-related condition
Identifiers:
MedGen: CN239331

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV003244149Invitae
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Likely pathogenic
(Dec 9, 2021)
germlineclinical testing

PubMed (5)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Increasing the number of diagnostic mutations in malignant hyperthermia.

Levano S, Vukcevic M, Singer M, Matter A, Treves S, Urwyler A, Girard T.

Hum Mutat. 2009 Apr;30(4):590-8. doi: 10.1002/humu.20878.

PubMed [citation]
PMID:
19191329

Genetic variation in RYR1 and malignant hyperthermia phenotypes.

Carpenter D, Robinson RL, Quinnell RJ, Ringrose C, Hogg M, Casson F, Booms P, Iles DE, Halsall PJ, Steele DS, Shaw MA, Hopkins PM.

Br J Anaesth. 2009 Oct;103(4):538-48. doi: 10.1093/bja/aep204. Epub 2009 Jul 31.

PubMed [citation]
PMID:
19648156
See all PubMed Citations (5)

Details of each submission

From Invitae, SCV003244149.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (5)

Description

In summary, the currently available evidence indicates that the variant is pathogenic, but additional data are needed to prove that conclusively. Therefore, this variant has been classified as Likely Pathogenic. This variant disrupts the p.Arg2336 amino acid residue in RYR1. Other variant(s) that disrupt this residue have been determined to be pathogenic (PMID: 19191329, 19648156, 21455645, 23736090). This suggests that this residue is clinically significant, and that variants that disrupt this residue are likely to be disease-causing. Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is expected to disrupt RYR1 protein function. This variant has not been reported in the literature in individuals affected with RYR1-related conditions. This variant is not present in population databases (gnomAD no frequency). This sequence change replaces arginine, which is basic and polar, with leucine, which is neutral and non-polar, at codon 2336 of the RYR1 protein (p.Arg2336Leu).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 19, 2024