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NM_000540.3(RYR1):c.14581C>A (p.Arg4861Ser) AND RYR1-related disorder

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Oct 12, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002866591.2

Allele description [Variation Report for NM_000540.3(RYR1):c.14581C>A (p.Arg4861Ser)]

NM_000540.3(RYR1):c.14581C>A (p.Arg4861Ser)

Gene:
RYR1:ryanodine receptor 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19q13.2
Genomic location:
Preferred name:
NM_000540.3(RYR1):c.14581C>A (p.Arg4861Ser)
HGVS:
  • NC_000019.10:g.38580439C>A
  • NG_008866.1:g.151740C>A
  • NM_000540.3:c.14581C>AMANE SELECT
  • NM_001042723.2:c.14566C>A
  • NP_000531.2:p.Arg4861Ser
  • NP_000531.2:p.Arg4861Ser
  • NP_001036188.1:p.Arg4856Ser
  • LRG_766t1:c.14581C>A
  • LRG_766:g.151740C>A
  • LRG_766p1:p.Arg4861Ser
  • NC_000019.9:g.39071079C>A
  • NM_000540.2:c.14581C>A
Protein change:
R4856S
Molecular consequence:
  • NM_000540.3:c.14581C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001042723.2:c.14566C>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
RYR1-related disorder
Synonyms:
RYR1-Related Disorders; RYR1-related condition
Identifiers:
MedGen: CN239331

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV003234646Invitae
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Likely pathogenic
(Oct 12, 2022)
germlineclinical testing

PubMed (7)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Familial and sporadic forms of central core disease are associated with mutations in the C-terminal domain of the skeletal muscle ryanodine receptor.

Monnier N, Romero NB, Lerale J, Landrieu P, Nivoche Y, Fardeau M, Lunardi J.

Hum Mol Genet. 2001 Oct 15;10(22):2581-92.

PubMed [citation]
PMID:
11709545

Identification of four novel mutations in the C-terminal membrane spanning domain of the ryanodine receptor 1: association with central core disease and alteration of calcium homeostasis.

Tilgen N, Zorzato F, Halliger-Keller B, Muntoni F, Sewry C, Palmucci LM, Schneider C, Hauser E, Lehmann-Horn F, Müller CR, Treves S.

Hum Mol Genet. 2001 Dec 1;10(25):2879-87.

PubMed [citation]
PMID:
11741831
See all PubMed Citations (7)

Details of each submission

From Invitae, SCV003234646.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (7)

Description

This variant is not present in population databases (gnomAD no frequency). In summary, the currently available evidence indicates that the variant is pathogenic, but additional data are needed to prove that conclusively. Therefore, this variant has been classified as Likely Pathogenic. This variant disrupts the p.Arg4861 amino acid residue in RYR1. Other variant(s) that disrupt this residue have been determined to be pathogenic (PMID: 11709545, 11741831, 12565913, 14670767, 23394784, 25521991). This suggests that this residue is clinically significant, and that variants that disrupt this residue are likely to be disease-causing. Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is expected to disrupt RYR1 protein function. This variant has not been reported in the literature in individuals affected with RYR1-related conditions. This sequence change replaces arginine, which is basic and polar, with serine, which is neutral and polar, at codon 4861 of the RYR1 protein (p.Arg4861Ser).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 19, 2024