U.S. flag

An official website of the United States government

NM_004036.5(ADCY3):c.2883+1G>C AND not provided

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Dec 21, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002751077.3

Allele description [Variation Report for NM_004036.5(ADCY3):c.2883+1G>C]

NM_004036.5(ADCY3):c.2883+1G>C

Gene:
ADCY3:adenylate cyclase 3 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
2p23.3
Genomic location:
Preferred name:
NM_004036.5(ADCY3):c.2883+1G>C
HGVS:
  • NC_000002.12:g.24823208C>G
  • NM_001320613.2:c.2886+1G>C
  • NM_001377128.1:c.2949+1G>C
  • NM_001377129.1:c.2745+1G>C
  • NM_001377130.1:c.2332-578G>C
  • NM_001377131.1:c.2160+1G>C
  • NM_001377132.1:c.2883+1G>C
  • NM_004036.5:c.2883+1G>CMANE SELECT
  • NC_000002.11:g.25046077C>G
Molecular consequence:
  • NM_001377130.1:c.2332-578G>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001320613.2:c.2886+1G>C - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001377128.1:c.2949+1G>C - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001377129.1:c.2745+1G>C - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001377131.1:c.2160+1G>C - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001377132.1:c.2883+1G>C - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_004036.5:c.2883+1G>C - splice donor variant - [Sequence Ontology: SO:0001575]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV003020022Labcorp Genetics (formerly Invitae), Labcorp
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))		Likely pathogenic
(Dec 21, 2023) 		germlineclinical testing

PubMed (3)
[See all records that cite these PMIDs]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Splicing in action: assessing disease causing sequence changes.

Baralle D, Baralle M.

J Med Genet. 2005 Oct;42(10):737-48. Review.

PubMed [citation]
PMID:
16199547
PMCID:
PMC1735933

Loss-of-function mutations in ADCY3 cause monogenic severe obesity.

Saeed S, Bonnefond A, Tamanini F, Mirza MU, Manzoor J, Janjua QM, Din SM, Gaitan J, Milochau A, Durand E, Vaillant E, Haseeb A, De Graeve F, Rabearivelo I, Sand O, Queniat G, Boutry R, Schott DA, Ayesha H, Ali M, Khan WI, Butt TA, et al.

Nat Genet. 2018 Feb;50(2):175-179. doi: 10.1038/s41588-017-0023-6. Epub 2018 Jan 8.

PubMed [citation]
PMID:
29311637
See all PubMed Citations (3)

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV003020022.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (3)

Description

This sequence change affects a donor splice site in intron 18 of the ADCY3 gene. It is expected to disrupt RNA splicing. Variants that disrupt the donor or acceptor splice site typically lead to a loss of protein function (PMID: 16199547), and loss-of-function variants in ADCY3 are known to be pathogenic (PMID: 29311637). This variant is not present in population databases (gnomAD no frequency). This variant has not been reported in the literature in individuals affected with ADCY3-related conditions. ClinVar contains an entry for this variant (Variation ID: 1978639). Algorithms developed to predict the effect of sequence changes on RNA splicing suggest that this variant may disrupt the consensus splice site. In summary, the currently available evidence indicates that the variant is pathogenic, but additional data are needed to prove that conclusively. Therefore, this variant has been classified as Likely Pathogenic.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024