NM_001098668.4(SFTPA2):c.401T>C (p.Val134Ala) AND Inborn genetic diseases

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Mar 11, 2022
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002694209.2

Allele description [Variation Report for NM_001098668.4(SFTPA2):c.401T>C (p.Val134Ala)]

NM_001098668.4(SFTPA2):c.401T>C (p.Val134Ala)

Gene:

SFTPA2:surfactant protein A2 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

10q22.3

Genomic location:

Preferred name:

NM_001098668.4(SFTPA2):c.401T>C (p.Val134Ala)

HGVS:

NC_000010.11:g.79557555A>G
NG_013046.1:g.7853T>C
NM_001098668.4:c.401T>CMANE SELECT
NM_001320813.2:c.401T>C
NM_001320814.1:c.431T>C
NP_001092138.1:p.Val134Ala
NP_001307742.1:p.Val134Ala
NP_001307743.1:p.Val144Ala
NC_000010.10:g.81317311A>G
NM_001098668.2:c.401T>C

Protein change:

V134A

Molecular consequence:

NM_001098668.4:c.401T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001320813.2:c.401T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001320814.1:c.431T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Inborn genetic diseases
Identifiers:: MeSH: D030342; MedGen: C0950123

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Mus musculus SPT4A, DSIF elongation factor subunit (Supt4a), transcript variant ...
Mus musculus SPT4A, DSIF elongation factor subunit (Supt4a), transcript variant 4, non-coding RNA
gi|1246764261|ref|NR_149757.1|

Nucleotide

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV003732249	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Mar 11, 2022)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV003732249

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Mar 11, 2022)

germline

clinical testing

Citation Link

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Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV003732249.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.401T>C (p.V134A) alteration is located in exon 6 (coding exon 4) of the SFTPA2 gene. This alteration results from a T to C substitution at nucleotide position 401, causing the valine (V) at amino acid position 134 to be replaced by an alanine (A). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 1, 2024

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