NM_004260.4(RECQL4):c.1405G>A (p.Val469Met) AND Baller-Gerold syndrome

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Oct 8, 2022
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002628538.3

Allele description [Variation Report for NM_004260.4(RECQL4):c.1405G>A (p.Val469Met)]

NM_004260.4(RECQL4):c.1405G>A (p.Val469Met)

Gene:

RECQL4:RecQ like helicase 4 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

8q24.3

Genomic location:

Preferred name:

NM_004260.4(RECQL4):c.1405G>A (p.Val469Met)

HGVS:

NC_000008.11:g.144515228C>T
NG_016430.2:g.7599G>A
NG_033083.2:g.2238C>T
NM_001413017.1:c.1309G>A
NM_001413018.1:c.1405G>A
NM_001413019.1:c.1405G>A
NM_001413020.1:c.1309G>A
NM_001413021.1:c.334G>A
NM_001413022.1:c.334G>A
NM_001413023.1:c.334G>A
NM_001413024.1:c.334G>A
NM_001413025.1:c.1276G>A
NM_001413027.1:c.268G>A
NM_001413028.1:c.334G>A
NM_001413029.1:c.1054G>A
NM_001413030.1:c.268G>A
NM_001413031.1:c.268G>A
NM_001413032.1:c.268G>A
NM_001413033.1:c.1405G>A
NM_001413034.1:c.334G>A
NM_001413035.1:c.334G>A
NM_001413036.1:c.1405G>A
NM_001413037.1:c.334G>A
NM_001413038.1:c.334G>A
NM_001413039.1:c.1405G>A
NM_001413040.1:c.334G>A
NM_001413041.1:c.268G>A
NM_001413042.1:c.334G>A
NM_001413043.1:c.-63G>A
NM_004260.4:c.1405G>AMANE SELECT
NP_001399946.1:p.Val437Met
NP_001399947.1:p.Val469Met
NP_001399948.1:p.Val469Met
NP_001399949.1:p.Val437Met
NP_001399950.1:p.Val112Met
NP_001399951.1:p.Val112Met
NP_001399952.1:p.Val112Met
NP_001399953.1:p.Val112Met
NP_001399954.1:p.Val426Met
NP_001399956.1:p.Val90Met
NP_001399957.1:p.Val112Met
NP_001399958.1:p.Val352Met
NP_001399959.1:p.Val90Met
NP_001399960.1:p.Val90Met
NP_001399961.1:p.Val90Met
NP_001399962.1:p.Val469Met
NP_001399963.1:p.Val112Met
NP_001399964.1:p.Val112Met
NP_001399965.1:p.Val469Met
NP_001399966.1:p.Val112Met
NP_001399967.1:p.Val112Met
NP_001399968.1:p.Val469Met
NP_001399969.1:p.Val112Met
NP_001399970.1:p.Val90Met
NP_001399971.1:p.Val112Met
NP_004251.4:p.Val469Met
LRG_277t1:c.1405G>A
LRG_277:g.7599G>A
LRG_277p1:p.Val469Met
NC_000008.10:g.145740612C>T
NG_033083.1:g.2264C>T
NR_182090.1:n.1454G>A
NR_182091.1:n.1454G>A
NR_182092.1:n.1454G>A

Protein change:

V112M

Molecular consequence:

NM_001413017.1:c.1309G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001413018.1:c.1405G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001413019.1:c.1405G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001413020.1:c.1309G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001413021.1:c.334G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001413022.1:c.334G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001413023.1:c.334G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001413024.1:c.334G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001413025.1:c.1276G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001413027.1:c.268G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001413028.1:c.334G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001413029.1:c.1054G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001413030.1:c.268G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001413031.1:c.268G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001413032.1:c.268G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001413033.1:c.1405G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001413034.1:c.334G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001413035.1:c.334G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001413036.1:c.1405G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001413037.1:c.334G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001413038.1:c.334G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001413039.1:c.1405G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001413040.1:c.334G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001413041.1:c.268G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001413042.1:c.334G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_004260.4:c.1405G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Baller-Gerold syndrome (BGS)
Synonyms:: Craniosynostosis radial aplasia syndrome; Craniosynostosis with radial defects
Identifiers:: MONDO: MONDO:0009039; MedGen: C0265308; Orphanet: 1225; OMIM: 218600

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Abnormal development of cartilage and bone.<br/>Year introduced: 1985

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV003514887	Labcorp Genetics (formerly Invitae), Labcorp	criteria provided, single submitter (Invitae Variant Classification Sherloc (09022015))	Uncertain significance (Oct 8, 2022)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV003514887

Labcorp Genetics (formerly Invitae), Labcorp

criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))

Uncertain significance
(Oct 8, 2022)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]

PMID:: 28492532
PMCID:: PMC5632818

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV003514887.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

Description

In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Experimental studies and prediction algorithms are not available or were not evaluated, and the functional significance of this variant is currently unknown. This variant has not been reported in the literature in individuals affected with RECQL4-related conditions. The frequency data for this variant in the population databases is considered unreliable, as metrics indicate poor data quality at this position in the gnomAD database. This sequence change replaces valine, which is neutral and non-polar, with methionine, which is neutral and non-polar, at codon 469 of the RECQL4 protein (p.Val469Met).

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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