NM_212482.4(FN1):c.5828A>G (p.Asn1943Ser) AND not provided

This record was updated by the submitter. Please see the current version.

Germline classification:: Likely benign (1 submission)
Last evaluated:: Jul 8, 2022
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002602834.2

Allele description

NM_212482.4(FN1):c.5828A>G (p.Asn1943Ser)

Gene:

FN1:fibronectin 1 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

2q35

Genomic location:

Preferred name:

NM_212482.4(FN1):c.5828A>G (p.Asn1943Ser)

HGVS:

NC_000002.12:g.215376557T>C
NG_012196.2:g.64511A>G
NG_082816.1:g.1324T>C
NM_001306129.2:c.5828A>G
NM_001306130.2:c.5558A>G
NM_001306131.2:c.5285A>G
NM_001306132.2:c.5285A>G
NM_001365517.2:c.5558A>G
NM_001365518.2:c.5555A>G
NM_001365519.2:c.5558A>G
NM_001365520.2:c.5555A>G
NM_001365521.2:c.5558A>G
NM_001365522.2:c.5558A>G
NM_001365523.2:c.5285A>G
NM_001365524.2:c.5555A>G
NM_002026.4:c.5555A>G
NM_212474.3:c.5285A>G
NM_212476.3:c.5285A>G
NM_212478.3:c.5555A>G
NM_212482.4:c.5828A>GMANE SELECT
NP_001293058.2:p.Asn1943Ser
NP_001293059.2:p.Asn1853Ser
NP_001293060.2:p.Asn1762Ser
NP_001293061.2:p.Asn1762Ser
NP_001352446.1:p.Asn1853Ser
NP_001352447.1:p.Asn1852Ser
NP_001352448.1:p.Asn1853Ser
NP_001352449.1:p.Asn1852Ser
NP_001352450.1:p.Asn1853Ser
NP_001352451.1:p.Asn1853Ser
NP_001352452.1:p.Asn1762Ser
NP_001352453.1:p.Asn1852Ser
NP_002017.2:p.Asn1852Ser
NP_997639.2:p.Asn1762Ser
NP_997641.2:p.Asn1762Ser
NP_997643.2:p.Asn1852Ser
NP_997647.2:p.Asn1943Ser
NC_000002.11:g.216241280T>C
NG_012196.1:g.64512A>G

Protein change:

N1762S

Molecular consequence:

NM_001306129.2:c.5828A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001306130.2:c.5558A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001306131.2:c.5285A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001306132.2:c.5285A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001365517.2:c.5558A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001365518.2:c.5555A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001365519.2:c.5558A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001365520.2:c.5555A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001365521.2:c.5558A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001365522.2:c.5558A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001365523.2:c.5285A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001365524.2:c.5555A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_002026.4:c.5555A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_212474.3:c.5285A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_212476.3:c.5285A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_212478.3:c.5555A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_212482.4:c.5828A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

Recent activity

Clear Turn Off Turn On

SRX22846439 (1)
SRA

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

Help

Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV003496336	Invitae	criteria provided, single submitter (Invitae Variant Classification Sherloc (09022015))	Likely benign (Jul 8, 2022)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV003496336

Invitae

criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))

Likely benign
(Jul 8, 2022)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]

PMID:: 28492532
PMCID:: PMC5632818

Details of each submission

From Invitae, SCV003496336.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Feb 20, 2024

ClinVar

Relating variation to medicine