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NM_001371623.1(TCOF1):c.1228T>C (p.Ser410Pro) AND Inborn genetic diseases

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
May 26, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002568985.2

Allele description [Variation Report for NM_001371623.1(TCOF1):c.1228T>C (p.Ser410Pro)]

NM_001371623.1(TCOF1):c.1228T>C (p.Ser410Pro)

Gene:
TCOF1:treacle ribosome biogenesis factor 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
5q32
Genomic location:
Preferred name:
NM_001371623.1(TCOF1):c.1228T>C (p.Ser410Pro)
HGVS:
  • NC_000005.10:g.150374761T>C
  • NG_011341.1:g.22123T>C
  • NM_000356.4:c.997T>C
  • NM_001008657.3:c.1228T>C
  • NM_001135243.2:c.1228T>C
  • NM_001135244.2:c.1228T>C
  • NM_001135245.2:c.997T>C
  • NM_001195141.2:c.1228T>C
  • NM_001371623.1:c.1228T>CMANE SELECT
  • NP_000347.2:p.Ser333Pro
  • NP_001008657.1:p.Ser410Pro
  • NP_001128715.1:p.Ser410Pro
  • NP_001128716.1:p.Ser410Pro
  • NP_001128717.1:p.Ser333Pro
  • NP_001182070.1:p.Ser410Pro
  • NP_001358552.1:p.Ser410Pro
  • NC_000005.9:g.149754324T>C
  • NM_001135243.1:c.1228T>C
Protein change:
S333P
Links:
dbSNP: rs749270349
NCBI 1000 Genomes Browser:
rs749270349
Molecular consequence:
  • NM_000356.4:c.997T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001008657.3:c.1228T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001135243.2:c.1228T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001135244.2:c.1228T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001135245.2:c.997T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001195141.2:c.1228T>C - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001371623.1:c.1228T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Inborn genetic diseases
Identifiers:
MeSH: D030342; MedGen: C0950123

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV003544481Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Uncertain significance
(May 26, 2022) 		germlineclinical testing

Citation Link

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Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV003544481.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The c.1228T>C (p.S410P) alteration is located in exon 9 (coding exon 9) of the TCOF1 gene. This alteration results from a T to C substitution at nucleotide position 1228, causing the serine (S) at amino acid position 410 to be replaced by a proline (P). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 1, 2024