NM_000821.7(GGCX):c.1580C>T (p.Thr527Ile) AND Inborn genetic diseases

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Oct 12, 2021
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002548364.2

Allele description [Variation Report for NM_000821.7(GGCX):c.1580C>T (p.Thr527Ile)]

NM_000821.7(GGCX):c.1580C>T (p.Thr527Ile)

Gene:

GGCX:gamma-glutamyl carboxylase [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

2p11.2

Genomic location:

Preferred name:

NM_000821.7(GGCX):c.1580C>T (p.Thr527Ile)

HGVS:

NC_000002.12:g.85551841G>A
NG_011811.2:g.14694C>T
NM_000821.5:c.1580C>T
NM_000821.7:c.1580C>TMANE SELECT
NM_001142269.4:c.1409C>T
NP_000812.2:p.Thr527Ile
NP_001135741.1:p.Thr470Ile
LRG_592t1:c.1580C>T
LRG_592:g.14694C>T
LRG_592p1:p.Thr527Ile
NC_000002.11:g.85778964G>A
NC_000002.11:g.85778964G>A
NM_000821.6:c.1580C>T

Protein change:

T470I

Links:

dbSNP: rs78504541

NCBI 1000 Genomes Browser:

rs78504541

Molecular consequence:

NM_000821.7:c.1580C>T - missense variant - [Sequence Ontology: SO:0001583]
NM_001142269.4:c.1409C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Inborn genetic diseases
Identifiers:: MeSH: D030342; MedGen: C0950123

Recent activity

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rhodanese-like/PpiC domain-containing protein 12, chloroplastic isoform X2 [Cucu...
rhodanese-like/PpiC domain-containing protein 12, chloroplastic isoform X2 [Cucurbita maxima]
gi|1281021739|ref|XP_022995119.1|

Protein

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV003578186	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Oct 12, 2021)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV003578186

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Oct 12, 2021)

germline

clinical testing

Citation Link

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Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV003578186.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.1580C>T (p.T527I) alteration is located in exon 11 (coding exon 11) of the GGCX gene. This alteration results from a C to T substitution at nucleotide position 1580, causing the threonine (T) at amino acid position 527 to be replaced by an isoleucine (I). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Oct 13, 2024

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