NM_206933.4(USH2A):c.4016T>G (p.Val1339Gly) AND Inborn genetic diseases

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Jul 19, 2022
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002535362.2

Allele description [Variation Report for NM_206933.4(USH2A):c.4016T>G (p.Val1339Gly)]

NM_206933.4(USH2A):c.4016T>G (p.Val1339Gly)

Genes:

USH2A-AS1:USH2A antisense RNA 1 [Gene - HGNC]
USH2A:usherin [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

1q41

Genomic location:

Preferred name:

NM_206933.4(USH2A):c.4016T>G (p.Val1339Gly)

HGVS:

NC_000001.11:g.216198380A>C
NG_009497.2:g.230069T>G
NM_007123.6:c.4016T>G
NM_206933.4:c.4016T>GMANE SELECT
NP_009054.6:p.Val1339Gly
NP_996816.3:p.Val1339Gly
NC_000001.10:g.216371722A>C
NG_009497.1:g.230017T>G
NM_206933.2:c.4016T>G

Protein change:

V1339G

Links:

dbSNP: rs781668118

NCBI 1000 Genomes Browser:

rs781668118

Molecular consequence:

NM_007123.6:c.4016T>G - missense variant - [Sequence Ontology: SO:0001583]
NM_206933.4:c.4016T>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Inborn genetic diseases
Identifiers:: MeSH: D030342; MedGen: C0950123

Recent activity

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PREDICTED: Mus musculus immunoglobulin superfamily, DCC subclass, member 4 (Igdc...
PREDICTED: Mus musculus immunoglobulin superfamily, DCC subclass, member 4 (Igdcc4), transcript variant X22, mRNA
gi|1907199247|ref|XM_036155152.1|

Nucleotide
immunoglobulin superfamily DCC subclass member 4 isoform X6 [Mus musculus]
immunoglobulin superfamily DCC subclass member 4 isoform X6 [Mus musculus]
gi|1720432195|ref|XP_030100327.1|

Protein
immunoglobulin superfamily DCC subclass member 4 isoform X7 [Mus musculus]
immunoglobulin superfamily DCC subclass member 4 isoform X7 [Mus musculus]
gi|568961779|ref|XP_006511374.1|

Protein
SRX12705136 (1)
SRA
SRX9522398 (1)
SRA

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV003627170	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Jul 19, 2022)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV003627170

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Jul 19, 2022)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV003627170.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.4016T>G (p.V1339G) alteration is located in exon 18 (coding exon 17) of the USH2A gene. This alteration results from a T to G substitution at nucleotide position 4016, causing the valine (V) at amino acid position 1339 to be replaced by a glycine (G). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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