NM_032634.4(PIGO):c.1283T>A (p.Leu428Gln) AND Inborn genetic diseases

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Mar 25, 2021
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002530209.2

Allele description [Variation Report for NM_032634.4(PIGO):c.1283T>A (p.Leu428Gln)]

NM_032634.4(PIGO):c.1283T>A (p.Leu428Gln)

Gene:

PIGO:phosphatidylinositol glycan anchor biosynthesis class O [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

9p13.3

Genomic location:

Preferred name:

NM_032634.4(PIGO):c.1283T>A (p.Leu428Gln)

HGVS:

NC_000009.12:g.35092604A>T
NG_031990.1:g.8998T>A
NM_001201484.2:c.1283T>A
NM_032634.4:c.1283T>AMANE SELECT
NM_152850.4:c.1283T>A
NP_001188413.1:p.Leu428Gln
NP_116023.2:p.Leu428Gln
NP_690577.2:p.Leu428Gln
NC_000009.11:g.35092601A>T
NM_032634.3:c.1283T>A

Protein change:

L428Q

Links:

dbSNP: rs182396158

NCBI 1000 Genomes Browser:

rs182396158

Molecular consequence:

NM_001201484.2:c.1283T>A - missense variant - [Sequence Ontology: SO:0001583]
NM_032634.4:c.1283T>A - missense variant - [Sequence Ontology: SO:0001583]
NM_152850.4:c.1283T>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Inborn genetic diseases
Identifiers:: MeSH: D030342; MedGen: C0950123

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Plantago amplexicaulis voucher EDNA13-0033625 5.8S ribosomal RNA gene, partial s...
Plantago amplexicaulis voucher EDNA13-0033625 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence
gi|1182955675|gnl|uoguelph|MTA519-1 2|gb|KX282330.1|

Nucleotide

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV003730595	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Mar 25, 2021)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV003730595

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Mar 25, 2021)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV003730595.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.1283T>A (p.L428Q) alteration is located in exon 7 (coding exon 6) of the PIGO gene. This alteration results from a T to A substitution at nucleotide position 1283, causing the leucine (L) at amino acid position 428 to be replaced by a glutamine (Q). The in silico prediction for the p.L428Q alteration is inconclusive. Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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