NM_000059.4(BRCA2):c.9739C>T (p.Gln3247Ter) AND not provided

Germline classification:: Pathogenic (1 submission)
Last evaluated:: Jul 17, 2022
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002519019.1

Allele description [Variation Report for NM_000059.4(BRCA2):c.9739C>T (p.Gln3247Ter)]

NM_000059.4(BRCA2):c.9739C>T (p.Gln3247Ter)

Gene:

BRCA2:BRCA2 DNA repair associated [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

13q13.1

Genomic location:

Preferred name:

NM_000059.4(BRCA2):c.9739C>T (p.Gln3247Ter)

Other names:

9967C>T

HGVS:

NC_000013.11:g.32398252C>T
NG_012772.3:g.87773C>T
NM_000059.4:c.9739C>TMANE SELECT
NP_000050.2:p.Gln3247Ter
NP_000050.3:p.Gln3247Ter
LRG_293t1:c.9739C>T
LRG_293:g.87773C>T
LRG_293p1:p.Gln3247Ter
NC_000013.10:g.32972389C>T
NM_000059.3:c.9739C>T
p.Gln3247X

Protein change:

Q3247*

Links:

dbSNP: rs886040849

NCBI 1000 Genomes Browser:

rs886040849

Molecular consequence:

NM_000059.4:c.9739C>T - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV003194882	GeneDx	criteria provided, single submitter (GeneDx Variant Classification Process June 2021)	Pathogenic (Jul 17, 2022)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV003194882

GeneDx

criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)

Pathogenic
(Jul 17, 2022)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From GeneDx, SCV003194882.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

Nonsense variant predicted to result in protein truncation in a gene for which loss of function is a known mechanism of disease; Not observed at significant frequency in large population cohorts (gnomAD); Observed in a baby with Fanconi anemia, with confirmed chromosome breakage, co-occurring with a large deletion in PALB2 (Toksoy et al., 2020); Truncating variants in this gene are considered pathogenic by a well-established clinical consortium and/or database; Also known as 9967C>T; This variant is associated with the following publications: (PMID: 29446198, 33224011, 33224012)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 8, 2024

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