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NM_001077365.2(POMT1):c.1838G>A (p.Arg613His) AND Inborn genetic diseases

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Jan 5, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002518009.2

Allele description [Variation Report for NM_001077365.2(POMT1):c.1838G>A (p.Arg613His)]

NM_001077365.2(POMT1):c.1838G>A (p.Arg613His)

Gene:
POMT1:protein O-mannosyltransferase 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
9q34.13
Genomic location:
Preferred name:
NM_001077365.2(POMT1):c.1838G>A (p.Arg613His)
HGVS:
  • NC_000009.12:g.131522059G>A
  • NG_008896.1:g.24158G>A
  • NM_001077365.2:c.1838G>AMANE SELECT
  • NM_001077366.2:c.1676G>A
  • NM_001136113.2:c.1838G>A
  • NM_001136114.2:c.1487G>A
  • NM_001353193.2:c.1904G>A
  • NM_001353194.2:c.1676G>A
  • NM_001353195.2:c.1487G>A
  • NM_001353196.2:c.1748G>A
  • NM_001353197.2:c.1742G>A
  • NM_001353198.2:c.1742G>A
  • NM_001353199.2:c.1553G>A
  • NM_001353200.2:c.1382G>A
  • NM_001374689.1:c.1826G>A
  • NM_001374690.1:c.1619G>A
  • NM_001374691.1:c.1487G>A
  • NM_001374692.1:c.1487G>A
  • NM_001374693.1:c.1487G>A
  • NM_001374695.1:c.1448G>A
  • NM_007171.4:c.1904G>A
  • NP_001070833.1:p.Arg613His
  • NP_001070834.1:p.Arg559His
  • NP_001129585.1:p.Arg613His
  • NP_001129586.1:p.Arg496His
  • NP_001340122.2:p.Arg635His
  • NP_001340123.1:p.Arg559His
  • NP_001340124.1:p.Arg496His
  • NP_001340125.1:p.Arg583His
  • NP_001340126.2:p.Arg581His
  • NP_001340127.2:p.Arg581His
  • NP_001340128.2:p.Arg518His
  • NP_001340129.1:p.Arg461His
  • NP_001361618.1:p.Arg609His
  • NP_001361619.1:p.Arg540His
  • NP_001361620.1:p.Arg496His
  • NP_001361621.1:p.Arg496His
  • NP_001361622.1:p.Arg496His
  • NP_001361624.1:p.Arg483His
  • NP_009102.3:p.Arg635His
  • NP_009102.4:p.Arg635His
  • LRG_842t1:c.1904G>A
  • LRG_842t2:c.1838G>A
  • LRG_842p1:p.Arg635His
  • LRG_842p2:p.Arg613His
  • NC_000009.11:g.134397446G>A
  • NM_007171.3:c.1904G>A
  • NR_148391.2:n.1872G>A
  • NR_148392.2:n.2090G>A
  • NR_148393.2:n.2011G>A
  • NR_148394.2:n.1765G>A
  • NR_148395.2:n.2163G>A
  • NR_148396.2:n.1797G>A
  • NR_148397.2:n.1922G>A
  • NR_148398.2:n.1877G>A
  • NR_148399.2:n.2403G>A
  • NR_148400.2:n.2002G>A
Protein change:
R461H
Links:
dbSNP: rs147601415
NCBI 1000 Genomes Browser:
rs147601415
Molecular consequence:
  • NM_001077365.2:c.1838G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001077366.2:c.1676G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001136113.2:c.1838G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001136114.2:c.1487G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001353193.2:c.1904G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001353194.2:c.1676G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001353195.2:c.1487G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001353196.2:c.1748G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001353197.2:c.1742G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001353198.2:c.1742G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001353199.2:c.1553G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001353200.2:c.1382G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001374689.1:c.1826G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001374690.1:c.1619G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001374691.1:c.1487G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001374692.1:c.1487G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001374693.1:c.1487G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001374695.1:c.1448G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_007171.4:c.1904G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NR_148391.2:n.1872G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_148392.2:n.2090G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_148393.2:n.2011G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_148394.2:n.1765G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_148395.2:n.2163G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_148396.2:n.1797G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_148397.2:n.1922G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_148398.2:n.1877G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_148399.2:n.2403G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_148400.2:n.2002G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:
Inborn genetic diseases
Identifiers:
MeSH: D030342; MedGen: C0950123

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV003729339Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Uncertain significance
(Jan 5, 2021) 		germlineclinical testing

Citation Link

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV003729339.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The c.1904G>A (p.R635H) alteration is located in exon 19 (coding exon 18) of the POMT1 gene. This alteration results from a G to A substitution at nucleotide position 1904, causing the arginine (R) at amino acid position 635 to be replaced by a histidine (H). The p.R635H alteration is predicted to be tolerated by in silico analysis. Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024