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NM_206937.2(LIG4):c.2016C>G (p.Ser672Arg) AND Inborn genetic diseases

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Sep 17, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002517093.2

Allele description [Variation Report for NM_206937.2(LIG4):c.2016C>G (p.Ser672Arg)]

NM_206937.2(LIG4):c.2016C>G (p.Ser672Arg)

Gene:
LIG4:DNA ligase 4 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
13q33.3
Genomic location:
Preferred name:
NM_206937.2(LIG4):c.2016C>G (p.Ser672Arg)
HGVS:
  • NC_000013.11:g.108209253G>C
  • NG_007396.1:g.11282C>G
  • NM_001098268.2:c.2016C>G
  • NM_001330595.2:c.1815C>G
  • NM_001352598.2:c.2016C>G
  • NM_001352599.2:c.2016C>G
  • NM_001352600.2:c.2016C>G
  • NM_001352601.2:c.2016C>G
  • NM_001352602.2:c.2016C>G
  • NM_001352603.1:c.2016C>G
  • NM_001352604.2:c.2052C>G
  • NM_001379095.1:c.2016C>G
  • NM_002312.3:c.2016C>G
  • NM_206937.2:c.2016C>GMANE SELECT
  • NP_001091738.1:p.Ser672Arg
  • NP_001317524.1:p.Ser605Arg
  • NP_001339527.1:p.Ser672Arg
  • NP_001339528.1:p.Ser672Arg
  • NP_001339529.1:p.Ser672Arg
  • NP_001339530.1:p.Ser672Arg
  • NP_001339531.1:p.Ser672Arg
  • NP_001339532.1:p.Ser672Arg
  • NP_001339533.1:p.Ser684Arg
  • NP_001366024.1:p.Ser672Arg
  • NP_002303.2:p.Ser672Arg
  • NP_996820.1:p.Ser672Arg
  • LRG_79t1:c.2016C>G
  • LRG_79:g.11282C>G
  • LRG_79p1:p.Ser672Arg
  • NC_000013.10:g.108861601G>C
Protein change:
S605R
Links:
dbSNP: rs142144659
NCBI 1000 Genomes Browser:
rs142144659
Molecular consequence:
  • NM_001098268.2:c.2016C>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001330595.2:c.1815C>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001352598.2:c.2016C>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001352599.2:c.2016C>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001352600.2:c.2016C>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001352601.2:c.2016C>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001352602.2:c.2016C>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001352603.1:c.2016C>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001352604.2:c.2052C>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001379095.1:c.2016C>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_002312.3:c.2016C>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_206937.2:c.2016C>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Inborn genetic diseases
Identifiers:
MeSH: D030342; MedGen: C0950123

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV003683789Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Uncertain significance
(Sep 17, 2021) 		germlineclinical testing

Citation Link

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV003683789.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The c.2016C>G (p.S672R) alteration is located in exon 2 (coding exon 1) of the LIG4 gene. This alteration results from a C to G substitution at nucleotide position 2016, causing the serine (S) at amino acid position 672 to be replaced by an arginine (R). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024