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NM_198253.3(TERT):c.2105C>T (p.Pro702Leu) AND Pulmonary fibrosis

Germline classification:
Likely risk allele (1 submission)
Last evaluated:
Jun 9, 2022
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002509550.8

Allele description [Variation Report for NM_198253.3(TERT):c.2105C>T (p.Pro702Leu)]

NM_198253.3(TERT):c.2105C>T (p.Pro702Leu)

Gene:
TERT:telomerase reverse transcriptase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
5p15.33
Genomic location:
Preferred name:
NM_198253.3(TERT):c.2105C>T (p.Pro702Leu)
Other names:
p.Pro702Leu
HGVS:
  • NC_000005.10:g.1279316G>A
  • NG_009265.1:g.20732C>T
  • NM_001193376.3:c.2105C>T
  • NM_198253.3:c.2105C>TMANE SELECT
  • NP_001180305.1:p.Pro702Leu
  • NP_937983.2:p.Pro702Leu
  • NP_937983.2:p.Pro702Leu
  • LRG_343t1:c.2105C>T
  • LRG_343:g.20732C>T
  • LRG_343p1:p.Pro702Leu
  • NC_000005.9:g.1279431G>A
  • NM_198253.2:c.2105C>T
  • NR_149162.3:n.2184C>T
  • NR_149163.3:n.2184C>T
Protein change:
P702L
Links:
dbSNP: rs754809046
NCBI 1000 Genomes Browser:
rs754809046
Molecular consequence:
  • NM_001193376.3:c.2105C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_198253.3:c.2105C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NR_149162.3:n.2184C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_149163.3:n.2184C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:
Pulmonary fibrosis
Identifiers:
MONDO: MONDO:0002771; MedGen: C0034069; Human Phenotype Ontology: HP:0002206

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002547398Garcia Pulmonary Genetics Research Laboratory, Columbia University Irving Medical Center
no assertion criteria provided
Likely risk allele
(Jun 9, 2022)
germlineresearch

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedresearch

Details of each submission

From Garcia Pulmonary Genetics Research Laboratory, Columbia University Irving Medical Center, SCV002547398.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedresearchnot provided

Description

Leukocyte telomere length (by qPCR) less than 10th percentile age-adjusted

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 3, 2024