NM_000059.4(BRCA2):c.7479G>A (p.Met2493Ile) AND not provided

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Jan 5, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002509325.8

Allele description [Variation Report for NM_000059.4(BRCA2):c.7479G>A (p.Met2493Ile)]

NM_000059.4(BRCA2):c.7479G>A (p.Met2493Ile)

Gene:

BRCA2:BRCA2 DNA repair associated [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

13q13.1

Genomic location:

Preferred name:

NM_000059.4(BRCA2):c.7479G>A (p.Met2493Ile)

HGVS:

NC_000013.11:g.32356471G>A
NG_012772.3:g.45992G>A
NM_000059.4:c.7479G>AMANE SELECT
NP_000050.2:p.Met2493Ile
NP_000050.3:p.Met2493Ile
LRG_293t1:c.7479G>A
LRG_293:g.45992G>A
LRG_293p1:p.Met2493Ile
NC_000013.10:g.32930608G>A
NM_000059.3:c.7479G>A

Protein change:

M2493I

Links:

dbSNP: rs876661086

NCBI 1000 Genomes Browser:

rs876661086

Molecular consequence:

NM_000059.4:c.7479G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

Recent activity

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INHBB inhibin subunit beta B [Homo sapiens]
INHBB inhibin subunit beta B [Homo sapiens]
Gene ID:3625

Gene
B3 domain-containing transcription factor VRN1 [Populus trichocarpa]
B3 domain-containing transcription factor VRN1 [Populus trichocarpa]
gi|1375854590|ref|XP_024455012.1|

Protein
Longpotamon yangtsekiense yangtsekiense isolate 02 28S ribosomal RNA gene, parti...
Longpotamon yangtsekiense yangtsekiense isolate 02 28S ribosomal RNA gene, partial sequence
gi|973278183|gb|KT586417.1|

Nucleotide

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000279486	GeneDx	criteria provided, single submitter (GeneDx Variant Classification Process June 2021)	Uncertain significance (Jan 5, 2023)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000279486

GeneDx

criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)

Uncertain significance
(Jan 5, 2023)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From GeneDx, SCV000279486.8

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

Not observed at significant frequency in large population cohorts (gnomAD); In silico analysis supports that this missense variant does not alter protein structure/function; Has not been previously published as pathogenic or benign to our knowledge; Also known as 7707G>A; This variant is associated with the following publications: (PMID: 12228710, 27397505, 31911673, 29884841, 32377563)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Nov 10, 2024

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