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NM_170707.4(LMNA):c.1718C>T (p.Ser573Leu) AND Congenital muscular dystrophy due to LMNA mutation

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Apr 15, 2022
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002509159.1

Allele description [Variation Report for NM_170707.4(LMNA):c.1718C>T (p.Ser573Leu)]

NM_170707.4(LMNA):c.1718C>T (p.Ser573Leu)

Gene:
LMNA:lamin A/C [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1q22
Genomic location:
Preferred name:
NM_170707.4(LMNA):c.1718C>T (p.Ser573Leu)
Other names:
chr1-156138507-C-T
HGVS:
  • NC_000001.11:g.156138507C>T
  • NG_008692.2:g.60935C>T
  • NM_001257374.3:c.1382C>T
  • NM_001282626.2:c.1718C>T
  • NM_170707.4:c.1718C>TMANE SELECT
  • NM_170708.4:c.1628C>T
  • NP_001244303.1:p.Ser461Leu
  • NP_001269555.1:p.Ser573Leu
  • NP_733821.1:p.Ser573Leu
  • NP_733822.1:p.Ser543Leu
  • LRG_254t2:c.1718C>T
  • LRG_254:g.60935C>T
  • NC_000001.10:g.156108298C>T
  • NM_170707.2:c.1718C>T
  • NM_170707.3(LMNA):c.1718C>T
  • NM_170707.3:c.1718C>T
  • P02545:p.Ser573Leu
  • c.1718C>T
Protein change:
S461L; SER573LEU
Links:
UniProtKB: P02545#VAR_039789; OMIM: 150330.0041; dbSNP: rs60890628
NCBI 1000 Genomes Browser:
rs60890628
Molecular consequence:
  • NM_001257374.3:c.1382C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001282626.2:c.1718C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_170707.4:c.1718C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_170708.4:c.1628C>T - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Name:
Congenital muscular dystrophy due to LMNA mutation
Synonyms:
Congenital muscular dystrophy, LMNA-related; Lamin A-related Congenital Muscular Dystrophy
Identifiers:
MONDO: MONDO:0013178; MedGen: C2750785; Orphanet: 157973; OMIM: 613205

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002547317Department of Medical Genetics, National Institute of Health
no assertion criteria provided
Pathogenic
(Apr 15, 2022)
de novoclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
Moroccande novoyes1not providednot providednot providednot providedclinical testing

Details of each submission

From Department of Medical Genetics, National Institute of Health, SCV002547317.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1Moroccan1not providednot providedclinical testingnot provided

Description

We report the case of a 7-month-old Moroccan male child presenting with congenital hypotonia, muscle weakness, dropped head syndrome, and normal heart function. In the literature, the NM_170707.4(LMNA):c.1718C>T (p.Ser573Leu) (dbSNP: rs60890628) variant in exon 11 of the LMNA gene has been identified in individuals across multiple forms: In the heterozygous state with dilated cardiomyopathy (Taylor 2003 PMID:12628721, Pasotti 2008 PMID:18926329, Dal Ferro 2017 PMID: 28416588, Burstein 2021 PMID: 32746448), hypertrophic cardiomyopathy (Francisco 2017 PMID: 28874324). Moreover, patients with Limb-Girdle or Emery-Dreifuss muscular dystrophy (Benedetti 2007 PMID: 17377071, Bernasconi 2018 PMID: 29693488), and familial partial lipodystrophy (Lanktree 2007 PMID: 17250669) were also reported. In the homozygous state, this variant has been reported in an individual with arthropathy, tendinous calcinosis, and progeroid features (Van Esch 2006 PMID: 16278265) with no cardiac involvement. The heterozygous missense c.1718C>T variant was not found in 138 Moroccan clinical exomes (in-house database), and It was classified as a pathogenic variant with PP5, PM1, PM2, PP2, PP3, and PS2 rules according to the recommendations of ACMG/AMP. We report for the first time a new phenotype associated with a de novo variant in exon 11 of the LMNA gene: Congenital muscular dystrophy. We assume that it is a strong candidate variation responsible for the phenotype in our patient.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1de novoyesnot providednot providednot provided1not providednot providednot provided

Last Updated: Oct 20, 2024