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NM_001042492.3(NF1):c.4070del (p.Phe1357fs) AND multiple conditions

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Jan 11, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002507065.1

Allele description [Variation Report for NM_001042492.3(NF1):c.4070del (p.Phe1357fs)]

NM_001042492.3(NF1):c.4070del (p.Phe1357fs)

Gene:
NF1:neurofibromin 1 [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
17q11.2
Genomic location:
Preferred name:
NM_001042492.3(NF1):c.4070del (p.Phe1357fs)
HGVS:
  • NC_000017.11:g.31249079del
  • NG_009018.1:g.159103del
  • NM_000267.3:c.4070del
  • NM_001042492.3:c.4070delMANE SELECT
  • NP_000258.1:p.Phe1357fs
  • NP_001035957.1:p.Phe1357fs
  • LRG_214t1:c.4070del
  • LRG_214:g.159103del
  • LRG_214p1:p.Phe1357fs
  • NC_000017.10:g.29576096del
  • NC_000017.10:g.29576097del
  • NM_000267.3:c.4070delT
Protein change:
F1357fs
Links:
dbSNP: rs1555617354
NCBI 1000 Genomes Browser:
rs1555617354
Molecular consequence:
  • NM_000267.3:c.4070del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001042492.3:c.4070del - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Name:
Neurofibromatosis, familial spinal (FSNF)
Identifiers:
MONDO: MONDO:0008078; MedGen: C1834235; Orphanet: 636; OMIM: 162210
Name:
Juvenile myelomonocytic leukemia (JMML)
Synonyms:
LEUKEMIA, JUVENILE MYELOMONOCYTIC, SOMATIC
Identifiers:
MONDO: MONDO:0011908; MedGen: C0349639; Orphanet: 86834; OMIM: 607785; Human Phenotype Ontology: HP:0012209
Name:
Neurofibromatosis, type 1 (NF1)
Synonyms:
NEUROFIBROMATOSIS, TYPE I; Recklinghausen's disease; Von Recklinghausen disease; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0018975; MedGen: C0027831; Orphanet: 636; OMIM: 162200
Name:
Neurofibromatosis-Noonan syndrome (NFNS)
Synonyms:
Neurofibromatosis with Noonan phenotype
Identifiers:
MONDO: MONDO:0011035; MedGen: C2931482; Orphanet: 638; OMIM: 601321
Name:
Café-au-lait macules with pulmonary stenosis (WTSN)
Synonyms:
Pulmonic stenosis with cafe-au-lait spots
Identifiers:
MONDO: MONDO:0008672; MedGen: C0553586; OMIM: 193520

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002796956Fulgent Genetics, Fulgent Genetics
criteria provided, single submitter

(ACMG Guidelines, 2015)		Likely pathogenic
(Jan 11, 2022) 		unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Fulgent Genetics, Fulgent Genetics, SCV002796956.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024