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NM_001034853.2(RPGR):c.1708A>G (p.Thr570Ala) AND multiple conditions

Germline classification:
Likely benign (1 submission)
Last evaluated:
Oct 14, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002496810.2

Allele description [Variation Report for NM_001034853.2(RPGR):c.1708A>G (p.Thr570Ala)]

NM_001034853.2(RPGR):c.1708A>G (p.Thr570Ala)

Gene:
RPGR:retinitis pigmentosa GTPase regulator [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
Xp11.4
Genomic location:
Preferred name:
NM_001034853.2(RPGR):c.1708A>G (p.Thr570Ala)
HGVS:
  • NC_000023.11:g.38287906T>C
  • NG_009553.1:g.44630A>G
  • NM_000328.3:c.1708A>G
  • NM_001034853.2:c.1708A>GMANE SELECT
  • NM_001367245.1:c.1705A>G
  • NM_001367246.1:c.1522A>G
  • NM_001367247.1:c.1572+3053A>G
  • NM_001367248.1:c.1602+3053A>G
  • NM_001367249.1:c.1569+3053A>G
  • NM_001367250.1:c.1569+3053A>G
  • NM_001367251.1:c.1386+3053A>G
  • NP_000319.1:p.Thr570Ala
  • NP_001030025.1:p.Thr570Ala
  • NP_001354174.1:p.Thr569Ala
  • NP_001354175.1:p.Thr508Ala
  • NC_000023.10:g.38147159T>C
  • NM_000328.2:c.1708A>G
  • NM_001034853.1:c.1708A>G
  • NR_159803.1:n.2070A>G
Protein change:
T508A
Links:
dbSNP: rs768169831
NCBI 1000 Genomes Browser:
rs768169831
Molecular consequence:
  • NM_001367247.1:c.1572+3053A>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001367248.1:c.1602+3053A>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001367249.1:c.1569+3053A>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001367250.1:c.1569+3053A>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001367251.1:c.1386+3053A>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_000328.3:c.1708A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001034853.2:c.1708A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001367245.1:c.1705A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001367246.1:c.1522A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NR_159803.1:n.2070A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:
X-linked cone-rod dystrophy 1 (CORDX1)
Identifiers:
MONDO: MONDO:0010566; MedGen: C1844776; Orphanet: 1872; OMIM: 304020
Name:
Retinitis pigmentosa 3
Synonyms:
Cone-rod degeneration X-linked; Choroidoretinal degeneration with retinal reflex in heterozygous women; Retinitis pigmentosa 15
Identifiers:
MONDO: MONDO:0010227; MedGen: C1845667; Orphanet: 791; OMIM: 300029
Name:
Retinitis pigmentosa, X-linked, and sinorespiratory infections, with or without deafness (RPSRDF)
Identifiers:
MedGen: C2749137; Orphanet: 247522; OMIM: 300455
Name:
Macular degeneration, X-linked atrophic (RPGR)
Identifiers:
MONDO: MONDO:0010443; MedGen: C3151784; Orphanet: 1872; OMIM: 300834

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002807955Fulgent Genetics, Fulgent Genetics
criteria provided, single submitter

(ACMG Guidelines, 2015)		Likely benign
(Oct 14, 2021) 		unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Fulgent Genetics, Fulgent Genetics, SCV002807955.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024