NM_003265.3(TLR3):c.1660C>T (p.Pro554Ser) AND multiple conditions

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Apr 11, 2022
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002496289.1

Allele description [Variation Report for NM_003265.3(TLR3):c.1660C>T (p.Pro554Ser)]

NM_003265.3(TLR3):c.1660C>T (p.Pro554Ser)

Gene:

TLR3:toll like receptor 3 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

4q35.1

Genomic location:

Preferred name:

NM_003265.3(TLR3):c.1660C>T (p.Pro554Ser)

HGVS:

NC_000004.12:g.186083346C>T
NG_007278.1:g.19192C>T
NM_003265.3:c.1660C>TMANE SELECT
NP_003256.1:p.Pro554Ser
NP_003256.1:p.Pro554Ser
LRG_117t1:c.1660C>T
LRG_117:g.19192C>T
LRG_117p1:p.Pro554Ser
NC_000004.11:g.187004500C>T
NM_003265.2:c.1660C>T
O15455:p.Pro554Ser

Protein change:

P554S; PRO554SER

Links:

UniProtKB: O15455#VAR_054887; OMIM: 603029.0001; dbSNP: rs121434431

NCBI 1000 Genomes Browser:

rs121434431

Molecular consequence:

NM_003265.3:c.1660C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Susceptibility to HIV infection
Synonyms:: HIV-1, SUSCEPTIBILITY TO; HUMAN IMMUNODEFICIENCY VIRUS TYPE 1, RESISTANCE TO; Human immunodeficiency virus type 1, susceptibility to
Identifiers:: MONDO: MONDO:0004951; MedGen: C1836230; OMIM: 609423

Name:: Immunodeficiency 83, susceptibility to viral infections
Synonyms:: Herpes simplex encephalitis 2
Identifiers:: MONDO: MONDO:0800187; MedGen: C2751803; Orphanet: 1930; OMIM: 613002

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002806182	Fulgent Genetics, Fulgent Genetics	criteria provided, single submitter (ACMG Guidelines, 2015)	Uncertain significance (Apr 11, 2022)	unknown	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002806182

Fulgent Genetics, Fulgent Genetics

criteria provided, single submitter

(ACMG Guidelines, 2015)

Uncertain significance
(Apr 11, 2022)

unknown

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	unknown	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Fulgent Genetics, Fulgent Genetics, SCV002806182.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	unknown	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Oct 13, 2024

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