NM_000204.5(CFI):c.1656A>G (p.Lys552=) AND multiple conditions

Germline classification:: Likely benign (1 submission)
Last evaluated:: Feb 26, 2022
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002494153.1

Allele description [Variation Report for NM_000204.5(CFI):c.1656A>G (p.Lys552=)]

NM_000204.5(CFI):c.1656A>G (p.Lys552=)

Gene:

CFI:complement factor I [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

4q25

Genomic location:

Preferred name:

NM_000204.5(CFI):c.1656A>G (p.Lys552=)

HGVS:

NC_000004.12:g.109740989T>C
NG_007569.1:g.65997A>G
NM_000204.5:c.1656A>GMANE SELECT
NM_001318057.2:c.1680A>G
NM_001331035.2:c.1635A>G
NM_001375278.1:c.1558+1502A>G
NM_001375279.1:c.1534+1502A>G
NM_001375280.1:c.1513+1502A>G
NM_001375281.1:c.1534+1502A>G
NM_001375282.1:c.1513+1502A>G
NM_001375283.1:c.1599A>G
NM_001375284.1:c.1047A>G
NP_000195.3:p.Lys552=
NP_001304986.2:p.Lys560=
NP_001317964.1:p.Lys545=
NP_001362212.1:p.Lys533=
NP_001362213.1:p.Lys349=
LRG_48:g.65997A>G
NC_000004.11:g.110662145T>C
NR_164671.1:n.1403A>G
NR_164672.1:n.1706A>G
NR_164673.1:n.1680A>G

Links:

dbSNP: rs1308386684

NCBI 1000 Genomes Browser:

rs1308386684

Molecular consequence:

NM_001375278.1:c.1558+1502A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001375279.1:c.1534+1502A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001375280.1:c.1513+1502A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001375281.1:c.1534+1502A>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001375282.1:c.1513+1502A>G - intron variant - [Sequence Ontology: SO:0001627]
NR_164671.1:n.1403A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_164672.1:n.1706A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_164673.1:n.1680A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NM_000204.5:c.1656A>G - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001318057.2:c.1680A>G - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001331035.2:c.1635A>G - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001375283.1:c.1599A>G - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001375284.1:c.1047A>G - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Name:: Atypical hemolytic-uremic syndrome with I factor anomaly
Synonyms:: HEMOLYTIC UREMIC SYNDROME, ATYPICAL, SUSCEPTIBILITY TO, 3; AHUS, SUSCEPTIBILITY TO, 3; Atypical hemolytic-uremic syndrome 3
Identifiers:: MONDO: MONDO:0013041; MedGen: C2752039; Orphanet: 2134; OMIM: 612923

Name:: Age related macular degeneration 13
Identifiers:: MONDO: MONDO:0014189; MedGen: C3809523; OMIM: 615439

Name:: Factor I deficiency (CFID)
Synonyms:: Complement factor I deficiency
Identifiers:: MONDO: MONDO:0012594; MedGen: C3463916; OMIM: 610984

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

Help

Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002795218	Fulgent Genetics, Fulgent Genetics	criteria provided, single submitter (ACMG Guidelines, 2015)	Likely benign (Feb 26, 2022)	unknown	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002795218

Fulgent Genetics, Fulgent Genetics

criteria provided, single submitter

(ACMG Guidelines, 2015)

Likely benign
(Feb 26, 2022)

unknown

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	unknown	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Fulgent Genetics, Fulgent Genetics, SCV002795218.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	unknown	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

ClinVar

Relating variation to medicine