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NM_005138.3(SCO2):c.244A>G (p.Lys82Glu) AND multiple conditions

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
May 10, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002488735.1

Allele description [Variation Report for NM_005138.3(SCO2):c.244A>G (p.Lys82Glu)]

NM_005138.3(SCO2):c.244A>G (p.Lys82Glu)

Genes:
NCAPH2:non-SMC condensin II complex subunit H2 [Gene - OMIM - HGNC]
SCO2:synthesis of cytochrome C oxidase 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
22q13.33
Genomic location:
Preferred name:
NM_005138.3(SCO2):c.244A>G (p.Lys82Glu)
HGVS:
  • NC_000022.11:g.50524168T>C
  • NG_011860.1:g.10918A>G
  • NG_016235.1:g.7272A>G
  • NG_021419.1:g.20953T>C
  • NM_001169109.2:c.244A>G
  • NM_001169110.1:c.244A>G
  • NM_001169111.2:c.244A>G
  • NM_001185011.2:c.*793T>C
  • NM_005138.3:c.244A>GMANE SELECT
  • NM_152299.4:c.*793T>CMANE SELECT
  • NP_001162580.1:p.Lys82Glu
  • NP_001162581.1:p.Lys82Glu
  • NP_001162582.1:p.Lys82Glu
  • NP_005129.2:p.Lys82Glu
  • NP_005129.2:p.Lys82Glu
  • LRG_727:g.10918A>G
  • NC_000022.10:g.50962597T>C
  • NM_005138.2:c.244A>G
Protein change:
K82E
Links:
dbSNP: rs765425160
NCBI 1000 Genomes Browser:
rs765425160
Molecular consequence:
  • NM_001185011.2:c.*793T>C - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_152299.4:c.*793T>C - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001169109.2:c.244A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001169110.1:c.244A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001169111.2:c.244A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_005138.3:c.244A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Cardioencephalomyopathy, fatal infantile, due to cytochrome c oxidase deficiency 1 (MC4DN2)
Synonyms:
CYTOCHROME c OXIDASE DEFICIENCY, FATAL INFANTILE, WITH CARDIOENCEPHALOMYOPATHY; Cardioencephalomyopathy, fatal infantile, due to cytochrome c oxidase deficiency; MITOCHONDRIAL COMPLEX IV DEFICIENCY, NUCLEAR TYPE 2
Identifiers:
MONDO: MONDO:0011451; MedGen: C5399977; Orphanet: 1561; OMIM: 604377
Name:
Myopia 6 (MYP6)
Synonyms:
Myopia, susceptibility to
Identifiers:
MONDO: MONDO:0012154; MedGen: C1837148; OMIM: 608908

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002782588Fulgent Genetics, Fulgent Genetics
criteria provided, single submitter

(ACMG Guidelines, 2015)		Uncertain significance
(May 10, 2022) 		unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Fulgent Genetics, Fulgent Genetics, SCV002782588.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024