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NM_000233.4(LHCGR):c.1669G>A (p.Glu557Lys) AND multiple conditions

Germline classification:
Benign (1 submission)
Last evaluated:
Jul 24, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002488722.1

Allele description [Variation Report for NM_000233.4(LHCGR):c.1669G>A (p.Glu557Lys)]

NM_000233.4(LHCGR):c.1669G>A (p.Glu557Lys)

Genes:
STON1-GTF2A1L:STON1-GTF2A1L readthrough [Gene - HGNC]
LHCGR:luteinizing hormone/choriogonadotropin receptor [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
2p16.3
Genomic location:
Preferred name:
NM_000233.4(LHCGR):c.1669G>A (p.Glu557Lys)
HGVS:
  • NC_000002.12:g.48688128C>T
  • NG_008193.2:g.72614G>A
  • NG_033050.2:g.163204C>T
  • NM_000233.4:c.1669G>AMANE SELECT
  • NM_001198593.2:c.3441+16448C>T
  • NP_000224.2:p.Glu557Lys
  • NC_000002.11:g.48915267C>T
  • NM_000233.3:c.1669G>A
Protein change:
E557K
Links:
dbSNP: rs146785679
NCBI 1000 Genomes Browser:
rs146785679
Molecular consequence:
  • NM_001198593.2:c.3441+16448C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_000233.4:c.1669G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Leydig cell agenesis
Synonyms:
LEYDIG CELL HYPOPLASIA WITH MALE PSEUDOHERMAPHRODITISM; LEYDIG CELL HYPOPLASIA, COMPLETE; HYPERGONADOTROPIC HYPOGONADISM, MALE, DUE TO LHCGR DEFECT; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0009384; MedGen: C0266432; OMIM: 238320
Name:
Gonadotropin-independent familial sexual precocity
Synonyms:
Testotoxicosis; Pubertas Praecox; Familial Testotoxicosis (subtype); See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0008303; MedGen: C0342549; Orphanet: 3000; OMIM: 176410

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002800226Fulgent Genetics, Fulgent Genetics
criteria provided, single submitter

(ACMG Guidelines, 2015)		Benign
(Jul 24, 2021) 		unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Fulgent Genetics, Fulgent Genetics, SCV002800226.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 1, 2024