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NM_001278116.2(L1CAM):c.3118G>A (p.Glu1040Lys) AND multiple conditions

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Apr 6, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002488524.1

Allele description [Variation Report for NM_001278116.2(L1CAM):c.3118G>A (p.Glu1040Lys)]

NM_001278116.2(L1CAM):c.3118G>A (p.Glu1040Lys)

Gene:
L1CAM:L1 cell adhesion molecule [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
Xq28
Genomic location:
Preferred name:
NM_001278116.2(L1CAM):c.3118G>A (p.Glu1040Lys)
HGVS:
  • NC_000023.11:g.153864633C>T
  • NG_009645.4:g.26541G>A
  • NM_000425.5:c.3118G>A
  • NM_001143963.2:c.3103G>A
  • NM_001278116.2:c.3118G>AMANE SELECT
  • NM_024003.3:c.3118G>A
  • NP_000416.1:p.Glu1040Lys
  • NP_001137435.1:p.Glu1035Lys
  • NP_001265045.1:p.Glu1040Lys
  • NP_076493.1:p.Glu1040Lys
  • LRG_14t1:c.3118G>A
  • LRG_14t2:c.3118G>A
  • LRG_14:g.26541G>A
  • LRG_14p1:p.Glu1040Lys
  • LRG_14p2:p.Glu1040Lys
  • NC_000023.10:g.153130088C>T
  • NG_009645.3:g.49591G>A
  • NM_000425.3:c.3118G>A
Protein change:
E1035K
Links:
dbSNP: rs1557090130
NCBI 1000 Genomes Browser:
rs1557090130
Molecular consequence:
  • NM_000425.5:c.3118G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001143963.2:c.3103G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001278116.2:c.3118G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_024003.3:c.3118G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
MASA syndrome (SPG1)
Synonyms:
MENTAL RETARDATION, APHASIA, SHUFFLING GAIT, AND ADDUCTED THUMBS; Spastic paraplegia 1; Mental Retardation Aphasia Shuffling Gait Adducted Thumbs (MASA); See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0010559; MedGen: C0795953; OMIM: 303350
Name:
X-linked complicated corpus callosum dysgenesis
Synonyms:
Corpus callosum, partial agenesis of, X-linked
Identifiers:
MONDO: MONDO:0010569; MedGen: C1839909; Orphanet: 1497; OMIM: 304100
Name:
X-linked hydrocephalus syndrome (HYCX)
Synonyms:
Aqueductal stenosis, X-linked; X-linked hydrocephalus; HYDROCEPHALUS, CONGENITAL, X-LINKED; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0010611; MedGen: C0265216; Orphanet: 2182; OMIM: 307000

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002789010Fulgent Genetics, Fulgent Genetics
criteria provided, single submitter

(ACMG Guidelines, 2015)		Uncertain significance
(Apr 6, 2022) 		unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Fulgent Genetics, Fulgent Genetics, SCV002789010.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024