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NM_025132.4(WDR19):c.3703G>A (p.Glu1235Lys) AND multiple conditions

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Apr 7, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002477273.1

Allele description [Variation Report for NM_025132.4(WDR19):c.3703G>A (p.Glu1235Lys)]

NM_025132.4(WDR19):c.3703G>A (p.Glu1235Lys)

Gene:
WDR19:WD repeat domain 19 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
4p14
Genomic location:
Preferred name:
NM_025132.4(WDR19):c.3703G>A (p.Glu1235Lys)
HGVS:
  • NC_000004.12:g.39274945G>A
  • NG_031813.1:g.97542G>A
  • NM_001317924.2:c.3223G>A
  • NM_025132.4:c.3703G>AMANE SELECT
  • NP_001304853.1:p.Glu1075Lys
  • NP_079408.3:p.Glu1235Lys
  • NC_000004.11:g.39276565G>A
  • NM_025132.3:c.3703G>A
  • Q8NEZ3:p.Glu1235Lys
Protein change:
E1075K; GLU1235LYS
Links:
UniProtKB: Q8NEZ3#VAR_073679; OMIM: 608151.0009; dbSNP: rs587777351
NCBI 1000 Genomes Browser:
rs587777351
Molecular consequence:
  • NM_001317924.2:c.3223G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_025132.4:c.3703G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Asphyxiating thoracic dystrophy 5 (SRTD5)
Synonyms:
SHORT-RIB THORACIC DYSPLASIA 5 WITH OR WITHOUT POLYDACTYLY; SHORT-RIB THORACIC DYSPLASIA 5 WITHOUT POLYDACTYLY
Identifiers:
MONDO: MONDO:0013717; MedGen: C3280598; Orphanet: 474; OMIM: 614376
Name:
Nephronophthisis 13 (NPHP13)
Identifiers:
MONDO: MONDO:0013718; MedGen: C3280612; Orphanet: 655; OMIM: 614377
Name:
Cranioectodermal dysplasia 4 (CED4)
Identifiers:
MONDO: MONDO:0013719; MedGen: C3280616; Orphanet: 1515; OMIM: 614378
Name:
Senior-Loken syndrome 8 (SLSN8)
Identifiers:
MONDO: MONDO:0014579; MedGen: C4225376; Orphanet: 3156; OMIM: 616307
Name:
Spermatogenic failure 72 (SPGF72)
Identifiers:
MONDO: MONDO:0030809; MedGen: C5676980; OMIM: 619867

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002781796Fulgent Genetics, Fulgent Genetics
criteria provided, single submitter

(ACMG Guidelines, 2015)		Likely pathogenic
(Apr 7, 2022) 		unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Fulgent Genetics, Fulgent Genetics, SCV002781796.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024