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NM_007194.4(CHEK2):c.106C>T (p.Gln36Ter) AND not provided

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jun 25, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002476725.1

Allele description [Variation Report for NM_007194.4(CHEK2):c.106C>T (p.Gln36Ter)]

NM_007194.4(CHEK2):c.106C>T (p.Gln36Ter)

Gene:
CHEK2:checkpoint kinase 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
22q12.1
Genomic location:
Preferred name:
NM_007194.4(CHEK2):c.106C>T (p.Gln36Ter)
HGVS:
  • NC_000022.11:g.28734616G>A
  • NG_008150.2:g.12251C>T
  • NM_001005735.2:c.106C>T
  • NM_001257387.2:c.-672C>T
  • NM_001349956.2:c.106C>T
  • NM_007194.4:c.106C>TMANE SELECT
  • NM_145862.2:c.106C>T
  • NP_001005735.1:p.Gln36Ter
  • NP_001336885.1:p.Gln36Ter
  • NP_009125.1:p.Gln36Ter
  • NP_665861.1:p.Gln36Ter
  • LRG_302t1:c.106C>T
  • LRG_302:g.12251C>T
  • LRG_302p1:p.Gln36Ter
  • NC_000022.10:g.29130604G>A
  • NM_007194.3:c.106C>T
Protein change:
Q36*
Links:
dbSNP: rs2146151890
NCBI 1000 Genomes Browser:
rs2146151890
Molecular consequence:
  • NM_001257387.2:c.-672C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001005735.2:c.106C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001349956.2:c.106C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_007194.4:c.106C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_145862.2:c.106C>T - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002774339Quest Diagnostics Nichols Institute San Juan Capistrano
criteria provided, single submitter

(Quest Diagnostics criteria)
Pathogenic
(Jun 25, 2021)
unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

A Standardized DNA Variant Scoring System for Pathogenicity Assessments in Mendelian Disorders.

Karbassi I, Maston GA, Love A, DiVincenzo C, Braastad CD, Elzinga CD, Bright AR, Previte D, Zhang K, Rowland CM, McCarthy M, Lapierre JL, Dubois F, Medeiros KA, Batish SD, Jones J, Liaquat K, Hoffman CA, Jaremko M, Wang Z, Sun W, Buller-Burckle A, et al.

Hum Mutat. 2016 Jan;37(1):127-34. doi: 10.1002/humu.22918. Epub 2015 Oct 29.

PubMed [citation]
PMID:
26467025
PMCID:
PMC4737317

Details of each submission

From Quest Diagnostics Nichols Institute San Juan Capistrano, SCV002774339.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

This nonsense variant causes the premature termination of CHEK2 protein synthesis, and is described in an online database as being pathogenic (ClinVar (http://www.ncbi.nlm.nih.gov/clinvar/)). In addition, it has been reported in an individual with colorectal cancer in the published literature. Based on the available information, this variant is classified as pathogenic.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024